Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 DUX4L26-201ENST00000489078 1255 ntBASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 FAM87A-204ENST00000613235 858 ntBASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
NPIPA2E9PIF3 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 BCL2-203ENST00000589955 5011 ntBASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.34■□□□□ 0.37
NPIPA2E9PIF3 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.33■□□□□ 0.37
NPIPA2E9PIF3 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 AC120498.9-201ENST00000339021 3867 ntBASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NPIPA2E9PIF3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.32■□□□□ 0.36
NPIPA2E9PIF3 HMGA1P5-201ENST00000412453 271 ntBASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms