Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC8.39□□□□□ -1.07
MSH5O43196 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC8.39□□□□□ -1.07
MSH5O43196 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSH5O43196 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
MSH5O43196 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC8.38□□□□□ -1.07
MSH5O43196 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSH5O43196 AC009779.8-201ENST00000641684 4384 ntBASIC8.38□□□□□ -1.07
MSH5O43196 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSH5O43196 MIR133A2-201ENST00000347538 102 ntBASIC8.38□□□□□ -1.07
MSH5O43196 SNORD30.1-201ENST00000391309 70 ntBASIC8.38□□□□□ -1.07
MSH5O43196 AL355796.1-201ENST00000406706 323 ntBASIC8.38□□□□□ -1.07
MSH5O43196 SNORA7.5-201ENST00000410672 110 ntBASIC8.38□□□□□ -1.07
MSH5O43196 AC245884.2-201ENST00000426257 404 ntBASIC8.38□□□□□ -1.07
MSH5O43196 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC8.38□□□□□ -1.07
MSH5O43196 EIF4A2P5-201ENST00000529914 499 ntBASIC8.38□□□□□ -1.07
MSH5O43196 LINC00933-203ENST00000559812 219 ntBASIC8.38□□□□□ -1.07
MSH5O43196 MIR5197-201ENST00000583721 112 ntBASIC8.38□□□□□ -1.07
MSH5O43196 AL513534.2-201ENST00000603836 250 ntBASIC8.38□□□□□ -1.07
MSH5O43196 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSH5O43196 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSH5O43196 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSH5O43196 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSH5O43196 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSH5O43196 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSH5O43196 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSH5O43196 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC8.38□□□□□ -1.07
MSH5O43196 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
MSH5O43196 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSH5O43196 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSH5O43196 YES1-203ENST00000577961 4554 ntTSL 5 BASIC8.37□□□□□ -1.07
MSH5O43196 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC8.37□□□□□ -1.07
MSH5O43196 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSH5O43196 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSH5O43196 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
MSH5O43196 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC8.37□□□□□ -1.07
MSH5O43196 RNU6-661P-201ENST00000362409 107 ntBASIC8.37□□□□□ -1.07
MSH5O43196 MIR548B-201ENST00000385247 97 ntBASIC8.37□□□□□ -1.07
MSH5O43196 RPL21P50-201ENST00000417698 477 ntBASIC8.37□□□□□ -1.07
MSH5O43196 AC027124.2-201ENST00000428249 105 ntBASIC8.37□□□□□ -1.07
MSH5O43196 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSH5O43196 AL133399.1-201ENST00000527476 298 ntBASIC8.37□□□□□ -1.07
MSH5O43196 POC1B-211ENST00000549504 581 ntTSL 5 BASIC8.37□□□□□ -1.07
MSH5O43196 MIR6798-201ENST00000612887 67 ntBASIC8.37□□□□□ -1.07
MSH5O43196 AC018628.1-201ENST00000624147 3819 ntBASIC8.37□□□□□ -1.07
MSH5O43196 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC8.37□□□□□ -1.07
MSH5O43196 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
MSH5O43196 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
MSH5O43196 UBE3AP2-201ENST00000429033 2259 ntBASIC8.37□□□□□ -1.07
MSH5O43196 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSH5O43196 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC8.37□□□□□ -1.07
MSH5O43196 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
MSH5O43196 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 RNU6-888P-201ENST00000363010 101 ntBASIC8.36□□□□□ -1.07
MSH5O43196 SNORD115-19-201ENST00000363098 82 ntBASIC8.36□□□□□ -1.07
MSH5O43196 SNORD115-18-201ENST00000363293 82 ntBASIC8.36□□□□□ -1.07
MSH5O43196 SNORD115-17-201ENST00000364612 82 ntBASIC8.36□□□□□ -1.07
MSH5O43196 SNORA70.3-201ENST00000365075 132 ntBASIC8.36□□□□□ -1.07
MSH5O43196 SNORA51.9-201ENST00000384295 124 ntBASIC8.36□□□□□ -1.07
MSH5O43196 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 AL645608.4-201ENST00000423619 154 ntBASIC8.36□□□□□ -1.07
MSH5O43196 AP000936.3-201ENST00000438127 255 ntBASIC8.36□□□□□ -1.07
MSH5O43196 snoU13.29-201ENST00000459370 104 ntBASIC8.36□□□□□ -1.07
MSH5O43196 RPS26P55-201ENST00000471178 356 ntBASIC8.36□□□□□ -1.07
MSH5O43196 SNRPCP3-201ENST00000474888 476 ntBASIC8.36□□□□□ -1.07
MSH5O43196 RN7SL382P-201ENST00000482631 282 ntBASIC8.36□□□□□ -1.07
MSH5O43196 RNU2-35P-201ENST00000516446 142 ntBASIC8.36□□□□□ -1.07
MSH5O43196 RNA5SP206-201ENST00000516703 121 ntBASIC8.36□□□□□ -1.07
MSH5O43196 RN7SKP277-201ENST00000516895 283 ntBASIC8.36□□□□□ -1.07
MSH5O43196 RN7SL404P-201ENST00000582421 281 ntBASIC8.36□□□□□ -1.07
MSH5O43196 MIR5006-201ENST00000583027 110 ntBASIC8.36□□□□□ -1.07
MSH5O43196 AC103810.7-201ENST00000607821 91 ntBASIC8.36□□□□□ -1.07
MSH5O43196 IGKV2OR2-10-201ENST00000613976 311 ntBASIC8.36□□□□□ -1.07
MSH5O43196 AC005562.2-201ENST00000618264 111 ntBASIC8.36□□□□□ -1.07
MSH5O43196 U6.111-201ENST00000636093 83 ntBASIC8.36□□□□□ -1.07
MSH5O43196 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC8.36□□□□□ -1.07
MSH5O43196 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
MSH5O43196 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC8.36□□□□□ -1.07
MSH5O43196 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 AC007998.4-201ENST00000612496 2533 ntBASIC8.36□□□□□ -1.07
MSH5O43196 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC8.36□□□□□ -1.07
MSH5O43196 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
MSH5O43196 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC8.36□□□□□ -1.07
MSH5O43196 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH5O43196 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
MSH5O43196 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH5O43196 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
MSH5O43196 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
MSH5O43196 RNU1-75P-201ENST00000347264 129 ntBASIC8.35□□□□□ -1.07
MSH5O43196 RNA5SP242-201ENST00000364171 118 ntBASIC8.35□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms