Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL590556.1-201ENST00000423231 483 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 RPL7L1P9-201ENST00000431298 745 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 KNOP1P3-201ENST00000446933 426 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AC073587.1-201ENST00000447093 876 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 ISCUP1-201ENST00000454451 448 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 RPL21P11-201ENST00000461458 483 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 RPL21P39-201ENST00000463605 483 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AC109925.1-201ENST00000478069 331 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AC132942.1-201ENST00000486753 483 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AC093591.1-201ENST00000491435 481 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 RPL21P16-201ENST00000495531 483 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 HMGN1P11-201ENST00000508668 303 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 RNA5SP362-201ENST00000516048 118 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 RNU4-60P-201ENST00000517239 135 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AP006245.2-201ENST00000522004 300 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 TRAV37-201ENST00000553906 342 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AL442163.3-201ENST00000554110 156 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 HMGB1P14-201ENST00000557424 591 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AL078605.1-201ENST00000603529 500 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 AC098826.3-201ENST00000603823 466 ntBASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HIF3AQ9Y2N7 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AC007685.1-201ENST00000329806 452 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RNU5A-1-201ENST00000362698 116 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RNU6-704P-201ENST00000364162 103 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RNU6-512P-201ENST00000364438 103 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RNU6-827P-201ENST00000365553 106 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RNU6-395P-201ENST00000365662 106 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RNU6-47P-201ENST00000383866 107 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RNU6-937P-201ENST00000384325 106 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 MIR600-201ENST00000385007 98 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RN7SKP51-201ENST00000410781 304 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AL096701.2-201ENST00000416920 238 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AC079355.1-201ENST00000421770 223 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 TMEM167AP1-201ENST00000423409 219 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 TDGF1P1-201ENST00000445734 527 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RN7SL443P-201ENST00000464331 290 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RNA5SP471-201ENST00000516971 106 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AC091144.1-201ENST00000519573 138 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 RAB9BP1-201ENST00000519581 626 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AC021006.3-201ENST00000530771 192 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AC023824.2-201ENST00000566185 400 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AC022968.1-201ENST00000567372 442 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 MIR6886-201ENST00000619864 61 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 BMS1P21-201ENST00000634565 365 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 AL049767.1-202ENST00000637826 242 ntBASIC4.59□□□□□ -1.67
HIF3AQ9Y2N7 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
HIF3AQ9Y2N7 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
HIF3AQ9Y2N7 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
HIF3AQ9Y2N7 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 PABPC1P6-201ENST00000445594 1829 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC104260.2-201ENST00000623551 3497 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC022893.2-201ENST00000564832 3296 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 Y_RNA.8-201ENST00000362353 102 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 U3.2-201ENST00000362981 210 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 MIR613-201ENST00000385248 95 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AL079342.1-201ENST00000401460 267 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 OR3A2-201ENST00000408891 1076 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 Y_RNA.626-201ENST00000411288 95 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC017079.2-201ENST00000416102 485 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 MTCO1P39-201ENST00000426148 480 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AC007389.2-201ENST00000434630 306 ntBASIC4.58□□□□□ -1.68
HIF3AQ9Y2N7 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms