RNA–Protein interactions for RNA: ENST00000517239.1

RNU4-60P-201, Transcript of RNA, U4 small nuclear 60, pseudogene, humanhuman

BASIC

Gene RNU4-60P, Length 135 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-60P-201ENST00000517239 CHIC1Q5VXU3 224 aa10.83□□□□□ -0.68
RNU4-60P-201ENST00000517239 AEBP2Q6ZN18 517 aaPredicted RBP10.36□□□□□ -0.75
RNU4-60P-201ENST00000517239 PHF23Q9BUL5 403 aaPredicted RBP9.64□□□□□ -0.87
RNU4-60P-201ENST00000517239 EHMT2Q96KQ7 1210 aa9.3□□□□□ -0.92
RNU4-60P-201ENST00000517239 PLPPR3Q6T4P5 718 aa9.13□□□□□ -0.95
RNU4-60P-201ENST00000517239 SLC24A1O60721 1099 aa9.04□□□□□ -0.96
RNU4-60P-201ENST00000517239 KCNA4P22459 653 aa8.88□□□□□ -0.99
RNU4-60P-201ENST00000517239 CSRNP3Q8WYN3 585 aa8.77□□□□□ -1.01
RNU4-60P-201ENST00000517239 SENP3Q9H4L4 574 aaPredicted RBP8.61□□□□□ -1.03
RNU4-60P-201ENST00000517239 ADRA2BP18089 450 aa8.59□□□□□ -1.03
RNU4-60P-201ENST00000517239 SLC4A1APQ9BWU0 796 aaKnown RBP8.59□□□□□ -1.03
RNU4-60P-201ENST00000517239 RTN4Q9NQC3 1192 aaKnown RBP8.57□□□□□ -1.04
RNU4-60P-201ENST00000517239 AMER1Q5JTC6 1135 aaPredicted RBP8.5□□□□□ -1.05
RNU4-60P-201ENST00000517239 PPP6R1Q9UPN7 881 aa8.28□□□□□ -1.08
RNU4-60P-201ENST00000517239 PPP4R3CPQ6ZMV5 832 aa8.18□□□□□ -1.1
RNU4-60P-201ENST00000517239 ZBTB22O15209 634 aa8.17□□□□□ -1.1
RNU4-60P-201ENST00000517239 NCBP3Q53F19 620 aaKnown RBP8.17□□□□□ -1.1
RNU4-60P-201ENST00000517239 NPM3O75607 178 aaKnown RBP8.06□□□□□ -1.12
RNU4-60P-201ENST00000517239 PRKCSHP14314 528 aaPredicted RBP7.97□□□□□ -1.13
RNU4-60P-201ENST00000517239 FOXD1Q16676 465 aa7.95□□□□□ -1.14
RNU4-60P-201ENST00000517239 FKBP8Q14318 412 aa7.91□□□□□ -1.14
RNU4-60P-201ENST00000517239 FOXD4L1Q9NU39 408 aa7.91□□□□□ -1.14
RNU4-60P-201ENST00000517239 BCANQ96GW7 911 aa7.83□□□□□ -1.16
RNU4-60P-201ENST00000517239 PLCB2Q00722 1185 aa7.81□□□□□ -1.16
RNU4-60P-201ENST00000517239 TAOK2Q9UL54 1235 aa7.81□□□□□ -1.16
RNU4-60P-201ENST00000517239 HAP1P54257 671 aaPredicted RBP7.79□□□□□ -1.16
RNU4-60P-201ENST00000517239 DAXXQ9UER7 740 aaPredicted RBP7.77□□□□□ -1.17
RNU4-60P-201ENST00000517239 CNKSR2Q8WXI2 1034 aa7.75□□□□□ -1.17
RNU4-60P-201ENST00000517239 TPRNQ4KMQ1 711 aa7.71□□□□□ -1.18
RNU4-60P-201ENST00000517239 PIAS4Q8N2W9 510 aaPredicted RBP7.69□□□□□ -1.18
RNU4-60P-201ENST00000517239 VSIG10Q8N0Z9 540 aa7.62□□□□□ -1.19
RNU4-60P-201ENST00000517239 ARXQ96QS3 562 aa7.6□□□□□ -1.19
RNU4-60P-201ENST00000517239 TIMELESSQ9UNS1 1208 aa7.6□□□□□ -1.19
RNU4-60P-201ENST00000517239 TULP1O00294 542 aaPredicted RBP7.58□□□□□ -1.2
RNU4-60P-201ENST00000517239 DCAF8L2P0C7V8 631 aa7.58□□□□□ -1.2
RNU4-60P-201ENST00000517239 SCAF1Q9H7N4 1312 aaKnown RBP7.57□□□□□ -1.2
RNU4-60P-201ENST00000517239 DNAJC5BQ9UF47 199 aa7.57□□□□□ -1.2
RNU4-60P-201ENST00000517239 ATXN8OSP0DMR3 200 aa7.52□□□□□ -1.21
RNU4-60P-201ENST00000517239 GTF3C3Q9Y5Q9 886 aa7.48□□□□□ -1.21
RNU4-60P-201ENST00000517239 KDM2AQ9Y2K7 1162 aa7.47□□□□□ -1.21
RNU4-60P-201ENST00000517239 HOMEZQ8IX15 550 aa7.43□□□□□ -1.22
RNU4-60P-201ENST00000517239 SLC4A2P04920 1241 aa7.42□□□□□ -1.22
RNU4-60P-201ENST00000517239 FBLN2P98095 1184 aa7.42□□□□□ -1.22
RNU4-60P-201ENST00000517239 MYCNP04198 464 aaPredicted RBP7.4□□□□□ -1.22
RNU4-60P-201ENST00000517239 ERICH6Q7L0X2 663 aa7.39□□□□□ -1.23
RNU4-60P-201ENST00000517239 RNF216Q9NWF9 866 aaPredicted RBP7.39□□□□□ -1.23
RNU4-60P-201ENST00000517239 MAPK8IP2Q13387 824 aaPredicted RBP7.37□□□□□ -1.23
RNU4-60P-201ENST00000517239 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.36□□□□□ -1.23
RNU4-60P-201ENST00000517239 FBXO3Q9UK99 471 aa7.35□□□□□ -1.23
RNU4-60P-201ENST00000517239 PAXIP1Q6ZW49 1069 aaPredicted RBP7.34□□□□□ -1.23
RNU4-60P-201ENST00000517239 CFAP44Q96MT7 982 aa7.33□□□□□ -1.24
RNU4-60P-201ENST00000517239 BBXQ8WY36 941 aaPredicted RBP7.31□□□□□ -1.24
RNU4-60P-201ENST00000517239 PKD2Q13563 968 aa7.28□□□□□ -1.24
RNU4-60P-201ENST00000517239 TMEM132AQ24JP5 1023 aa7.28□□□□□ -1.24
RNU4-60P-201ENST00000517239 C14orf37Q86TY3 774 aa7.27□□□□□ -1.25
RNU4-60P-201ENST00000517239 NBR1Q14596 966 aa7.25□□□□□ -1.25
RNU4-60P-201ENST00000517239 TSHZ2Q9NRE2 1034 aa7.25□□□□□ -1.25
RNU4-60P-201ENST00000517239 RANGAP1P46060 587 aaPredicted RBP7.24□□□□□ -1.25
RNU4-60P-201ENST00000517239 VASPP50552 380 aaPredicted RBP7.24□□□□□ -1.25
RNU4-60P-201ENST00000517239 IFNLR1Q8IU57 520 aaPredicted RBP7.24□□□□□ -1.25
RNU4-60P-201ENST00000517239 NPM1P06748 294 aaKnown RBP eCLIP7.22□□□□□ -1.25
RNU4-60P-201ENST00000517239 ATF5Q9Y2D1 282 aaPredicted RBP7.21□□□□□ -1.26
RNU4-60P-201ENST00000517239 SPRYD3Q8NCJ5 442 aa7.19□□□□□ -1.26
RNU4-60P-201ENST00000517239 PODXL2Q9NZ53 605 aa7.16□□□□□ -1.26
RNU4-60P-201ENST00000517239 HOXD11P31277 338 aaPredicted RBP7.15□□□□□ -1.26
RNU4-60P-201ENST00000517239 SPDYE4A6NLX3 237 aa7.14□□□□□ -1.27
RNU4-60P-201ENST00000517239 ECM2O94769 699 aaPredicted RBP7.12□□□□□ -1.27
RNU4-60P-201ENST00000517239 SUPT5HO00267 1087 aaKnown RBP7.1□□□□□ -1.27
RNU4-60P-201ENST00000517239 PROM2Q8N271 834 aa7.04□□□□□ -1.28
RNU4-60P-201ENST00000517239 DNAJC5Q9H3Z4 198 aa7.04□□□□□ -1.28
RNU4-60P-201ENST00000517239 KLHL34Q8N239 644 aa7.03□□□□□ -1.28
RNU4-60P-201ENST00000517239 RGL2O15211 777 aa7.02□□□□□ -1.29
RNU4-60P-201ENST00000517239 SPOCK2Q92563 424 aa7.01□□□□□ -1.29
RNU4-60P-201ENST00000517239 DMRT2Q9Y5R5 561 aa7□□□□□ -1.29
RNU4-60P-201ENST00000517239 CHGAP10645 457 aaKnown RBP6.99□□□□□ -1.29
RNU4-60P-201ENST00000517239 SAMD1Q6SPF0 538 aaPredicted RBP6.99□□□□□ -1.29
RNU4-60P-201ENST00000517239 NPM2Q86SE8 214 aaKnown RBP6.98□□□□□ -1.29
RNU4-60P-201ENST00000517239 ZNF219Q9P2Y4 722 aaPredicted RBP6.98□□□□□ -1.29
RNU4-60P-201ENST00000517239 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.97□□□□□ -1.29
RNU4-60P-201ENST00000517239 MSH5O43196 834 aa6.97□□□□□ -1.29
RNU4-60P-201ENST00000517239 HNRNPUL2Q1KMD3 747 aaKnown RBP6.97□□□□□ -1.29
RNU4-60P-201ENST00000517239 TRIM26Q12899 539 aaPredicted RBP6.94□□□□□ -1.3
RNU4-60P-201ENST00000517239 UBTFP17480 764 aaKnown RBP6.93□□□□□ -1.3
RNU4-60P-201ENST00000517239 MKRN4PQ13434 485 aaPredicted RBP6.91□□□□□ -1.3
RNU4-60P-201ENST00000517239 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.9□□□□□ -1.3
RNU4-60P-201ENST00000517239 HRCP23327 699 aa6.86□□□□□ -1.31
RNU4-60P-201ENST00000517239 BRPF1P55201 1214 aaPredicted RBP6.85□□□□□ -1.31
RNU4-60P-201ENST00000517239 CIZ1Q9ULV3 898 aaPredicted RBP6.83□□□□□ -1.32
RNU4-60P-201ENST00000517239 U3KPZ7 1027 aaPredicted RBP6.82□□□□□ -1.32
RNU4-60P-201ENST00000517239 NEUROD2Q15784 382 aa6.8□□□□□ -1.32
RNU4-60P-201ENST00000517239 HS6ST3Q8IZP7 471 aa6.8□□□□□ -1.32
RNU4-60P-201ENST00000517239 LMOD2Q6P5Q4 547 aa6.79□□□□□ -1.32
RNU4-60P-201ENST00000517239 PLCD3Q8N3E9 789 aa6.79□□□□□ -1.32
RNU4-60P-201ENST00000517239 DCAF8L1A6NGE4 600 aa6.78□□□□□ -1.32
RNU4-60P-201ENST00000517239 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.77□□□□□ -1.33
RNU4-60P-201ENST00000517239 TRHP20396 242 aaPredicted RBP6.76□□□□□ -1.33
RNU4-60P-201ENST00000517239 GTPBP6O43824 516 aaPredicted RBP6.75□□□□□ -1.33
RNU4-60P-201ENST00000517239 NKX1-1Q15270 411 aaPredicted RBP6.74□□□□□ -1.33
RNU4-60P-201ENST00000517239 ARID3AQ99856 593 aa6.74□□□□□ -1.33
RNU4-60P-201ENST00000517239 ZMYND15Q9H091 742 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms