Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 Z98044.1-201ENST00000632503 1764 ntBASIC15.42■□□□□ 0.06
FOXA2Q9Y261 NBPF21P-201ENST00000425093 1451 ntBASIC15.42■□□□□ 0.06
FOXA2Q9Y261 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 C1QBPP2-201ENST00000528754 825 ntBASIC15.42■□□□□ 0.06
FOXA2Q9Y261 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXA2Q9Y261 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 PRORSD1P-201ENST00000295112 541 ntBASIC15.41■□□□□ 0.06
FOXA2Q9Y261 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 TUBB8P6-201ENST00000436895 1288 ntBASIC15.41■□□□□ 0.06
FOXA2Q9Y261 LY6E-205ENST00000519611 635 ntTSL 3 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 RNF121-214ENST00000533380 870 ntTSL 3 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 AC004264.1-201ENST00000608354 794 ntBASIC15.41■□□□□ 0.06
FOXA2Q9Y261 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA2Q9Y261 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 NEFHP1-201ENST00000412845 2629 ntBASIC15.4■□□□□ 0.06
FOXA2Q9Y261 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms