Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 C2orf69P3-201ENST00000565542 1120 ntBASIC19.62■□□□□ 0.73
VPS28Q9UK41 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.62■□□□□ 0.73
VPS28Q9UK41 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS28Q9UK41 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS28Q9UK41 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS28Q9UK41 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS28Q9UK41 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS28Q9UK41 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS28Q9UK41 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS28Q9UK41 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
VPS28Q9UK41 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS28Q9UK41 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS28Q9UK41 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
VPS28Q9UK41 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS28Q9UK41 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS28Q9UK41 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS28Q9UK41 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
VPS28Q9UK41 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS28Q9UK41 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
VPS28Q9UK41 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS28Q9UK41 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS28Q9UK41 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS28Q9UK41 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS28Q9UK41 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS28Q9UK41 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS28Q9UK41 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS28Q9UK41 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS28Q9UK41 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS28Q9UK41 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS28Q9UK41 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS28Q9UK41 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS28Q9UK41 AC010947.1-201ENST00000623454 693 ntBASIC19.6■□□□□ 0.73
VPS28Q9UK41 AC097493.4-201ENST00000641197 219 ntBASIC19.6■□□□□ 0.73
VPS28Q9UK41 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS28Q9UK41 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS28Q9UK41 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS28Q9UK41 LINC01568-207ENST00000641790 1380 ntBASIC19.59■□□□□ 0.73
VPS28Q9UK41 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS28Q9UK41 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS28Q9UK41 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS28Q9UK41 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.59■□□□□ 0.73
VPS28Q9UK41 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.59■□□□□ 0.73
VPS28Q9UK41 AC145285.6-201ENST00000604632 637 ntBASIC19.59■□□□□ 0.73
VPS28Q9UK41 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS28Q9UK41 KRT8P11-201ENST00000409686 1436 ntBASIC19.59■□□□□ 0.73
VPS28Q9UK41 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS28Q9UK41 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS28Q9UK41 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.58■□□□□ 0.73
VPS28Q9UK41 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
VPS28Q9UK41 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS28Q9UK41 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS28Q9UK41 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS28Q9UK41 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS28Q9UK41 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
VPS28Q9UK41 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS28Q9UK41 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS28Q9UK41 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms