Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 PVRIG2P-201ENST00000435460 978 ntBASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMD1Q9UGP4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 AC004870.1-201ENST00000315132 882 ntBASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 HBZP1-201ENST00000354915 429 ntBASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.86■□□□□ 0.77
LIMD1Q9UGP4 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 AL645929.1-201ENST00000420084 975 ntBASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 UNC93B7-201ENST00000509439 705 ntBASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 AC111152.3-201ENST00000569699 673 ntBASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 KRT8P11-201ENST00000409686 1436 ntBASIC19.85■□□□□ 0.77
LIMD1Q9UGP4 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 AC092597.1-201ENST00000487352 616 ntBASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIMD1Q9UGP4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms