Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 CKBP1-201ENST00000565489 1086 ntBASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM39Q9HCM9 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 AC211429.1-201ENST00000415277 523 ntBASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
TRIM39Q9HCM9 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
TRIM39Q9HCM9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 TSPY23P-201ENST00000440136 739 ntBASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 NAPSB-206ENST00000562112 1266 ntBASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 C2orf69P3-201ENST00000565542 1120 ntBASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 AC133561.5-201ENST00000635547 218 ntBASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 AC093484.2-201ENST00000580996 2166 ntBASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 CYP2D8P-201ENST00000433633 1490 ntBASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM39Q9HCM9 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 AC010947.1-201ENST00000623454 693 ntBASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM39Q9HCM9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.87■□□□□ 0.61
TRIM39Q9HCM9 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms