Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.74■□□□□ 0.27
LIME1Q9H400 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.74■□□□□ 0.27
LIME1Q9H400 AC116562.4-202ENST00000641738 218 ntBASIC16.74■□□□□ 0.27
LIME1Q9H400 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.74■□□□□ 0.27
LIME1Q9H400 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.74■□□□□ 0.27
LIME1Q9H400 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC16.74■□□□□ 0.27
LIME1Q9H400 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
LIME1Q9H400 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.74■□□□□ 0.27
LIME1Q9H400 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.73■□□□□ 0.27
LIME1Q9H400 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
LIME1Q9H400 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.73■□□□□ 0.27
LIME1Q9H400 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
LIME1Q9H400 TFP1-202ENST00000475455 1573 ntBASIC16.73■□□□□ 0.27
LIME1Q9H400 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LIME1Q9H400 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC16.73■□□□□ 0.27
LIME1Q9H400 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
LIME1Q9H400 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.73■□□□□ 0.27
LIME1Q9H400 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.73■□□□□ 0.27
LIME1Q9H400 TUBB8P6-201ENST00000436895 1288 ntBASIC16.73■□□□□ 0.27
LIME1Q9H400 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
LIME1Q9H400 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
LIME1Q9H400 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.73■□□□□ 0.27
LIME1Q9H400 KRT18P16-201ENST00000510337 1294 ntBASIC16.73■□□□□ 0.27
LIME1Q9H400 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.73■□□□□ 0.27
LIME1Q9H400 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.73■□□□□ 0.27
LIME1Q9H400 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.73■□□□□ 0.27
LIME1Q9H400 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.73■□□□□ 0.27
LIME1Q9H400 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
LIME1Q9H400 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
LIME1Q9H400 AC116351.2-201ENST00000606540 1585 ntBASIC16.72■□□□□ 0.27
LIME1Q9H400 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
LIME1Q9H400 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 TNXA-203ENST00000507684 2038 ntBASIC16.72■□□□□ 0.27
LIME1Q9H400 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LIME1Q9H400 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.72■□□□□ 0.27
LIME1Q9H400 AC007663.1-201ENST00000438948 1240 ntBASIC16.72■□□□□ 0.27
LIME1Q9H400 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.72■□□□□ 0.27
LIME1Q9H400 YBX1P10-201ENST00000444752 975 ntBASIC16.72■□□□□ 0.27
LIME1Q9H400 FAM207BP-201ENST00000447172 505 ntBASIC16.72■□□□□ 0.27
LIME1Q9H400 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LIME1Q9H400 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.72■□□□□ 0.27
LIME1Q9H400 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
LIME1Q9H400 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.72■□□□□ 0.27
LIME1Q9H400 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.72■□□□□ 0.27
LIME1Q9H400 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
LIME1Q9H400 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.72■□□□□ 0.27
LIME1Q9H400 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.72■□□□□ 0.27
LIME1Q9H400 AC141257.4-201ENST00000634557 245 ntBASIC16.72■□□□□ 0.27
LIME1Q9H400 AC136944.6-201ENST00000634818 245 ntBASIC16.72■□□□□ 0.27
LIME1Q9H400 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.72■□□□□ 0.27
LIME1Q9H400 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
LIME1Q9H400 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LIME1Q9H400 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIME1Q9H400 AC004408.2-201ENST00000623613 2777 ntBASIC16.72■□□□□ 0.27
LIME1Q9H400 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.72■□□□□ 0.27
LIME1Q9H400 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIME1Q9H400 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
LIME1Q9H400 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIME1Q9H400 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIME1Q9H400 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
LIME1Q9H400 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.71■□□□□ 0.27
LIME1Q9H400 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.71■□□□□ 0.27
LIME1Q9H400 CCR12P-201ENST00000446203 998 ntBASIC16.71■□□□□ 0.27
LIME1Q9H400 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIME1Q9H400 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.71■□□□□ 0.27
LIME1Q9H400 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.71■□□□□ 0.27
LIME1Q9H400 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.71■□□□□ 0.27
LIME1Q9H400 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms