Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 YBX1P10-201ENST00000444752 975 ntBASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 AC141586.5-201ENST00000624546 2050 ntBASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28BQ9BUN5 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 KRT18P5-201ENST00000436075 1291 ntBASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28BQ9BUN5 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 MIR6821-201ENST00000617625 74 ntBASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28BQ9BUN5 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC28BQ9BUN5 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC28BQ9BUN5 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.52■□□□□ 0.55
CCDC28BQ9BUN5 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.52■□□□□ 0.55
CCDC28BQ9BUN5 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC28BQ9BUN5 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.55
CCDC28BQ9BUN5 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC28BQ9BUN5 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC28BQ9BUN5 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
CCDC28BQ9BUN5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC28BQ9BUN5 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC28BQ9BUN5 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms