Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.68■□□□□ 0.26
COL12A1Q99715 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.68■□□□□ 0.26
COL12A1Q99715 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.68■□□□□ 0.26
COL12A1Q99715 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
COL12A1Q99715 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.68■□□□□ 0.26
COL12A1Q99715 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.68■□□□□ 0.26
COL12A1Q99715 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.67■□□□□ 0.26
COL12A1Q99715 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
COL12A1Q99715 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL12A1Q99715 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.67■□□□□ 0.26
COL12A1Q99715 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL12A1Q99715 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
COL12A1Q99715 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.67■□□□□ 0.26
COL12A1Q99715 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.67■□□□□ 0.26
COL12A1Q99715 AC004967.1-201ENST00000453589 447 ntBASIC16.67■□□□□ 0.26
COL12A1Q99715 SEC1P-202ENST00000473944 940 ntBASIC16.67■□□□□ 0.26
COL12A1Q99715 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.67■□□□□ 0.26
COL12A1Q99715 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.67■□□□□ 0.26
COL12A1Q99715 AC099336.1-202ENST00000602961 463 ntBASIC16.67■□□□□ 0.26
COL12A1Q99715 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.67■□□□□ 0.26
COL12A1Q99715 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL12A1Q99715 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.67■□□□□ 0.26
COL12A1Q99715 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL12A1Q99715 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
COL12A1Q99715 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.67■□□□□ 0.26
COL12A1Q99715 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.67■□□□□ 0.26
COL12A1Q99715 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.67■□□□□ 0.26
COL12A1Q99715 Z69720.1-201ENST00000601483 472 ntBASIC16.67■□□□□ 0.26
COL12A1Q99715 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
COL12A1Q99715 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.26
COL12A1Q99715 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.67■□□□□ 0.26
COL12A1Q99715 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC16.67■□□□□ 0.26
COL12A1Q99715 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL12A1Q99715 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL12A1Q99715 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL12A1Q99715 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL12A1Q99715 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
COL12A1Q99715 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.66■□□□□ 0.26
COL12A1Q99715 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.66■□□□□ 0.26
COL12A1Q99715 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL12A1Q99715 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.66■□□□□ 0.26
COL12A1Q99715 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL12A1Q99715 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL12A1Q99715 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL12A1Q99715 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.66■□□□□ 0.26
COL12A1Q99715 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.66■□□□□ 0.26
COL12A1Q99715 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.66■□□□□ 0.26
COL12A1Q99715 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
COL12A1Q99715 MIR7706-201ENST00000613747 67 ntBASIC16.66■□□□□ 0.26
COL12A1Q99715 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL12A1Q99715 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL12A1Q99715 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL12A1Q99715 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.66■□□□□ 0.26
COL12A1Q99715 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL12A1Q99715 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.66■□□□□ 0.26
COL12A1Q99715 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
COL12A1Q99715 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL12A1Q99715 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.66■□□□□ 0.26
COL12A1Q99715 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
COL12A1Q99715 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC16.65■□□□□ 0.26
COL12A1Q99715 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL12A1Q99715 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL12A1Q99715 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL12A1Q99715 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.65■□□□□ 0.26
COL12A1Q99715 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.65■□□□□ 0.26
COL12A1Q99715 AF186996.4-201ENST00000467186 377 ntBASIC16.65■□□□□ 0.26
COL12A1Q99715 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.65■□□□□ 0.26
COL12A1Q99715 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.65■□□□□ 0.26
COL12A1Q99715 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.65■□□□□ 0.26
COL12A1Q99715 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.65■□□□□ 0.26
COL12A1Q99715 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL12A1Q99715 KRT8P11-201ENST00000409686 1436 ntBASIC16.65■□□□□ 0.26
COL12A1Q99715 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.65■□□□□ 0.26
COL12A1Q99715 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL12A1Q99715 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
COL12A1Q99715 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL12A1Q99715 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.65■□□□□ 0.26
COL12A1Q99715 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL12A1Q99715 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL12A1Q99715 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL12A1Q99715 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL12A1Q99715 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.65■□□□□ 0.26
COL12A1Q99715 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.64■□□□□ 0.26
COL12A1Q99715 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
COL12A1Q99715 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
COL12A1Q99715 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL12A1Q99715 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL12A1Q99715 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL12A1Q99715 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms