Protein–RNA interactions for Protein: Q99536

VAT1, Synaptic vesicle membrane protein VAT-1 homolog, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1Q99536 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.42■□□□□ 0.7
VAT1Q99536 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VAT1Q99536 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VAT1Q99536 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VAT1Q99536 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VAT1Q99536 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.42■□□□□ 0.7
VAT1Q99536 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.42■□□□□ 0.7
VAT1Q99536 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.42■□□□□ 0.7
VAT1Q99536 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VAT1Q99536 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
VAT1Q99536 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.42■□□□□ 0.7
VAT1Q99536 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VAT1Q99536 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VAT1Q99536 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VAT1Q99536 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VAT1Q99536 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VAT1Q99536 CROCCP3-202ENST00000420820 1947 ntBASIC19.41■□□□□ 0.7
VAT1Q99536 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VAT1Q99536 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.41■□□□□ 0.7
VAT1Q99536 AC093503.3-201ENST00000624917 2352 ntBASIC19.41■□□□□ 0.7
VAT1Q99536 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VAT1Q99536 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.41■□□□□ 0.7
VAT1Q99536 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VAT1Q99536 GCSHP5-201ENST00000443090 522 ntBASIC19.41■□□□□ 0.7
VAT1Q99536 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.41■□□□□ 0.7
VAT1Q99536 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VAT1Q99536 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.41■□□□□ 0.7
VAT1Q99536 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.41■□□□□ 0.7
VAT1Q99536 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.41■□□□□ 0.7
VAT1Q99536 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.41■□□□□ 0.7
VAT1Q99536 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.41■□□□□ 0.7
VAT1Q99536 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VAT1Q99536 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.41■□□□□ 0.7
VAT1Q99536 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.41■□□□□ 0.7
VAT1Q99536 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VAT1Q99536 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VAT1Q99536 KRT8P11-201ENST00000409686 1436 ntBASIC19.41■□□□□ 0.7
VAT1Q99536 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VAT1Q99536 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 AC093525.10-201ENST00000625130 1569 ntBASIC19.4■□□□□ 0.7
VAT1Q99536 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.4■□□□□ 0.7
VAT1Q99536 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.4■□□□□ 0.7
VAT1Q99536 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 AC098590.1-201ENST00000468126 897 ntBASIC19.4■□□□□ 0.7
VAT1Q99536 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.4■□□□□ 0.7
VAT1Q99536 AC091390.4-202ENST00000476426 537 ntBASIC19.4■□□□□ 0.7
VAT1Q99536 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VAT1Q99536 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.4■□□□□ 0.7
VAT1Q99536 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.4■□□□□ 0.7
VAT1Q99536 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.4■□□□□ 0.7
VAT1Q99536 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.4■□□□□ 0.7
VAT1Q99536 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.4■□□□□ 0.7
VAT1Q99536 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
VAT1Q99536 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.4■□□□□ 0.7
VAT1Q99536 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.4■□□□□ 0.7
VAT1Q99536 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.4■□□□□ 0.7
VAT1Q99536 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.4■□□□□ 0.7
VAT1Q99536 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VAT1Q99536 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VAT1Q99536 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
VAT1Q99536 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
VAT1Q99536 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.39■□□□□ 0.7
VAT1Q99536 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.39■□□□□ 0.69
VAT1Q99536 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.39■□□□□ 0.69
VAT1Q99536 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.39■□□□□ 0.69
VAT1Q99536 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.39■□□□□ 0.69
VAT1Q99536 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.39■□□□□ 0.69
VAT1Q99536 AP001412.1-201ENST00000608405 714 ntBASIC19.39■□□□□ 0.69
VAT1Q99536 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
VAT1Q99536 AC004408.2-201ENST00000623613 2777 ntBASIC19.39■□□□□ 0.69
VAT1Q99536 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.39■□□□□ 0.69
VAT1Q99536 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.39■□□□□ 0.69
VAT1Q99536 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VAT1Q99536 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
VAT1Q99536 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
VAT1Q99536 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VAT1Q99536 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VAT1Q99536 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VAT1Q99536 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms