Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.99■□□□□ 0.47
PTCHD1Q96NR3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 MFAP1P1-201ENST00000442257 1255 ntBASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 AP005242.2-201ENST00000580065 1175 ntBASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.98■□□□□ 0.47
PTCHD1Q96NR3 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 AC133561.5-201ENST00000635547 218 ntBASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 KRT8P9-201ENST00000558927 1449 ntBASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTCHD1Q96NR3 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 AC096733.2-201ENST00000609937 1394 ntBASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 AC211429.1-201ENST00000415277 523 ntBASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 NAPSB-206ENST00000562112 1266 ntBASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 KRT8P11-201ENST00000409686 1436 ntBASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.96■□□□□ 0.47
PTCHD1Q96NR3 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
PTCHD1Q96NR3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
PTCHD1Q96NR3 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 TSPY21P-201ENST00000433481 731 ntBASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 CKBP1-201ENST00000565489 1086 ntBASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
PTCHD1Q96NR3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms