Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA1Q96BD8 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.55■□□□□ 0.72
SKA1Q96BD8 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 AL049597.2-201ENST00000565575 961 ntBASIC19.54■□□□□ 0.72
SKA1Q96BD8 RN7SL850P-201ENST00000579959 291 ntBASIC19.54■□□□□ 0.72
SKA1Q96BD8 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SKA1Q96BD8 FSCN1P1-201ENST00000568912 1481 ntBASIC19.54■□□□□ 0.72
SKA1Q96BD8 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.54■□□□□ 0.72
SKA1Q96BD8 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 AC026271.3-201ENST00000571884 352 ntBASIC19.53■□□□□ 0.72
SKA1Q96BD8 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SKA1Q96BD8 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.53■□□□□ 0.72
SKA1Q96BD8 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 AL032819.2-201ENST00000624543 2162 ntBASIC19.52■□□□□ 0.72
SKA1Q96BD8 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 LINC01465-201ENST00000408887 1940 ntBASIC19.52■□□□□ 0.72
SKA1Q96BD8 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SKA1Q96BD8 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
SKA1Q96BD8 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SKA1Q96BD8 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms