Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 TSPY21P-201ENST00000433481 731 ntBASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 NPAP1P7-201ENST00000613027 823 ntBASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
USHBP1Q8N6Y0 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 GAS2L1P1-201ENST00000420145 1480 ntBASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
USHBP1Q8N6Y0 USP48-205ENST00000421625 2818 ntTSL 2 BASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 AL645929.1-201ENST00000420084 975 ntBASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 ATP5G2P1-201ENST00000433580 426 ntBASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC25.14■■□□□ 1.62
USHBP1Q8N6Y0 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC25.14■■□□□ 1.61
USHBP1Q8N6Y0 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
USHBP1Q8N6Y0 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
USHBP1Q8N6Y0 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC25.14■■□□□ 1.61
USHBP1Q8N6Y0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
USHBP1Q8N6Y0 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
USHBP1Q8N6Y0 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
USHBP1Q8N6Y0 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
USHBP1Q8N6Y0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 AC079602.3-201ENST00000623931 403 ntBASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
USHBP1Q8N6Y0 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC25.1■■□□□ 1.61
USHBP1Q8N6Y0 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms