Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 KRT8P45-201ENST00000414328 1447 ntBASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.15■□□□□ 0.66
HDDC3Q8N4P3 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HDDC3Q8N4P3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 FAM86EP-206ENST00000510506 987 ntBASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
HDDC3Q8N4P3 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 PCDHAC2-203ENST00000615316 3011 ntBASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 TSPY21P-201ENST00000433481 731 ntBASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HDDC3Q8N4P3 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 HCG4P8-203ENST00000443049 980 ntBASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
HDDC3Q8N4P3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms