Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC65Q8IXS2 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC65Q8IXS2 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC65Q8IXS2 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CCDC65Q8IXS2 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC65Q8IXS2 RCC2P6-201ENST00000526625 1557 ntBASIC21.19■□□□□ 0.98
CCDC65Q8IXS2 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 AC004951.3-201ENST00000418645 1148 ntBASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC65Q8IXS2 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 TNXA-203ENST00000507684 2038 ntBASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 RPS2P55-201ENST00000397318 883 ntBASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 FAM197Y1-201ENST00000421178 764 ntBASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 AC107956.1-201ENST00000494359 873 ntBASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CCDC65Q8IXS2 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 AC012618.2-201ENST00000428058 849 ntBASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 AC091390.4-202ENST00000476426 537 ntBASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 CD177P1-201ENST00000606252 935 ntBASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 AP001412.1-201ENST00000608405 714 ntBASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 RNF165-205ENST00000588679 2904 ntBASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.16■□□□□ 0.98
CCDC65Q8IXS2 AC138932.1-201ENST00000534164 6830 ntBASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 KRT8P11-201ENST00000409686 1436 ntBASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 AC011298.2-201ENST00000617989 482 ntBASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC65Q8IXS2 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.98
CCDC65Q8IXS2 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC65Q8IXS2 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
CCDC65Q8IXS2 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC65Q8IXS2 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC65Q8IXS2 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC65Q8IXS2 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.14■□□□□ 0.98
CCDC65Q8IXS2 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.14■□□□□ 0.97
CCDC65Q8IXS2 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms