Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 UNC93B2-201ENST00000285383 730 ntBASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 FAM207BP-201ENST00000447172 505 ntBASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 AL355075.4-201ENST00000554988 638 ntBASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 AP000692.2-201ENST00000608391 879 ntBASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.65■□□□□ 0.42
NUP54Q7Z3B4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.64■□□□□ 0.42
NUP54Q7Z3B4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
NUP54Q7Z3B4 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
NUP54Q7Z3B4 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.64■□□□□ 0.42
NUP54Q7Z3B4 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
NUP54Q7Z3B4 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 RBM17P1-201ENST00000453646 1190 ntBASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 AC120498.9-201ENST00000339021 3867 ntBASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 SDHAP1-207ENST00000440850 2000 ntBASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NUP54Q7Z3B4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 AC018445.3-201ENST00000624177 1945 ntBASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 TSPY21P-201ENST00000433481 731 ntBASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 AC008040.2-201ENST00000461049 708 ntBASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP54Q7Z3B4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms