Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
VPS13CQ709C8 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
VPS13CQ709C8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13CQ709C8 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13CQ709C8 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC15.91■□□□□ 0.14
VPS13CQ709C8 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS13CQ709C8 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 MIR662-201ENST00000384847 95 ntBASIC15.9■□□□□ 0.14
VPS13CQ709C8 CHCHD2P8-201ENST00000429873 447 ntBASIC15.9■□□□□ 0.14
VPS13CQ709C8 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 SEC1P-202ENST00000473944 940 ntBASIC15.9■□□□□ 0.14
VPS13CQ709C8 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 GOLGA6L5P-202ENST00000515341 1828 ntBASIC15.9■□□□□ 0.14
VPS13CQ709C8 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 FOSL1P1-201ENST00000511041 816 ntBASIC15.9■□□□□ 0.14
VPS13CQ709C8 AC012615.1-201ENST00000565797 1299 ntBASIC15.9■□□□□ 0.14
VPS13CQ709C8 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
VPS13CQ709C8 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS13CQ709C8 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC15.89■□□□□ 0.14
VPS13CQ709C8 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 TK1-205ENST00000590862 642 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 AC034232.1-201ENST00000506026 1064 ntBASIC15.89■□□□□ 0.13
VPS13CQ709C8 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 TSPY22P-201ENST00000427496 604 ntBASIC15.89■□□□□ 0.13
VPS13CQ709C8 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS13CQ709C8 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS13CQ709C8 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 SDHAP1-207ENST00000440850 2000 ntBASIC15.88■□□□□ 0.13
VPS13CQ709C8 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 TSSC2-201ENST00000450217 709 ntBASIC15.88■□□□□ 0.13
VPS13CQ709C8 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 KRT16P4-201ENST00000453883 522 ntBASIC15.88■□□□□ 0.13
VPS13CQ709C8 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 AP000867.3-201ENST00000524675 377 ntBASIC15.88■□□□□ 0.13
VPS13CQ709C8 WDR6-223ENST00000627177 207 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 KRT16P6-202ENST00000425692 1426 ntBASIC15.88■□□□□ 0.13
VPS13CQ709C8 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS13CQ709C8 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
VPS13CQ709C8 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15.87■□□□□ 0.13
VPS13CQ709C8 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms