Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.62■□□□□ 0.89
KRT39Q6A163 AC008040.2-201ENST00000461049 708 ntBASIC20.62■□□□□ 0.89
KRT39Q6A163 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
KRT39Q6A163 NUDT16P1-203ENST00000513809 620 ntBASIC20.62■□□□□ 0.89
KRT39Q6A163 PRSS44-201ENST00000515154 1146 ntBASIC20.62■□□□□ 0.89
KRT39Q6A163 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.62■□□□□ 0.89
KRT39Q6A163 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.62■□□□□ 0.89
KRT39Q6A163 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.62■□□□□ 0.89
KRT39Q6A163 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
KRT39Q6A163 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.62■□□□□ 0.89
KRT39Q6A163 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
KRT39Q6A163 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.62■□□□□ 0.89
KRT39Q6A163 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
KRT39Q6A163 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.61■□□□□ 0.89
KRT39Q6A163 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.61■□□□□ 0.89
KRT39Q6A163 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.61■□□□□ 0.89
KRT39Q6A163 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.61■□□□□ 0.89
KRT39Q6A163 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
KRT39Q6A163 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.61■□□□□ 0.89
KRT39Q6A163 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
KRT39Q6A163 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
KRT39Q6A163 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.61■□□□□ 0.89
KRT39Q6A163 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.61■□□□□ 0.89
KRT39Q6A163 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 AC116562.2-201ENST00000507042 360 ntBASIC20.61■□□□□ 0.89
KRT39Q6A163 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.61■□□□□ 0.89
KRT39Q6A163 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
KRT39Q6A163 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
KRT39Q6A163 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
KRT39Q6A163 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT39Q6A163 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
KRT39Q6A163 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT39Q6A163 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.6■□□□□ 0.89
KRT39Q6A163 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
KRT39Q6A163 FAM207BP-201ENST00000447172 505 ntBASIC20.6■□□□□ 0.89
KRT39Q6A163 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.6■□□□□ 0.89
KRT39Q6A163 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
KRT39Q6A163 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT39Q6A163 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT39Q6A163 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT39Q6A163 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
KRT39Q6A163 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.6■□□□□ 0.89
KRT39Q6A163 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT39Q6A163 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
KRT39Q6A163 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
KRT39Q6A163 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
KRT39Q6A163 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT39Q6A163 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT39Q6A163 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
KRT39Q6A163 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.59■□□□□ 0.89
KRT39Q6A163 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.59■□□□□ 0.89
KRT39Q6A163 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.59■□□□□ 0.89
KRT39Q6A163 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.59■□□□□ 0.89
KRT39Q6A163 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.59■□□□□ 0.89
KRT39Q6A163 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.59■□□□□ 0.89
KRT39Q6A163 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
KRT39Q6A163 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
KRT39Q6A163 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT39Q6A163 AC120498.9-201ENST00000339021 3867 ntBASIC20.58■□□□□ 0.89
KRT39Q6A163 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT39Q6A163 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT39Q6A163 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT39Q6A163 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT39Q6A163 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
KRT39Q6A163 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
KRT39Q6A163 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms