Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.11■□□□□ 0.49
RAE1P78406 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.11■□□□□ 0.49
RAE1P78406 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.11■□□□□ 0.49
RAE1P78406 AL359736.2-201ENST00000621992 437 ntBASIC18.11■□□□□ 0.49
RAE1P78406 AC131212.4-201ENST00000623606 975 ntBASIC18.11■□□□□ 0.49
RAE1P78406 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.11■□□□□ 0.49
RAE1P78406 AC083906.6-201ENST00000641366 219 ntBASIC18.11■□□□□ 0.49
RAE1P78406 KRT8P11-201ENST00000409686 1436 ntBASIC18.11■□□□□ 0.49
RAE1P78406 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.11■□□□□ 0.49
RAE1P78406 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.11■□□□□ 0.49
RAE1P78406 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.11■□□□□ 0.49
RAE1P78406 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.11■□□□□ 0.49
RAE1P78406 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
RAE1P78406 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
RAE1P78406 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RAE1P78406 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RAE1P78406 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RAE1P78406 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RAE1P78406 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RAE1P78406 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
RAE1P78406 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RAE1P78406 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
RAE1P78406 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.1■□□□□ 0.49
RAE1P78406 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.1■□□□□ 0.49
RAE1P78406 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
RAE1P78406 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RAE1P78406 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
RAE1P78406 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RAE1P78406 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RAE1P78406 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RAE1P78406 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RAE1P78406 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RAE1P78406 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RAE1P78406 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RAE1P78406 KSR1P1-201ENST00000446298 240 ntBASIC18.1■□□□□ 0.49
RAE1P78406 ITM2C-210ENST00000620962 501 ntBASIC18.1■□□□□ 0.49
RAE1P78406 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RAE1P78406 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.1■□□□□ 0.49
RAE1P78406 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RAE1P78406 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.09■□□□□ 0.49
RAE1P78406 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
RAE1P78406 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
RAE1P78406 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.09■□□□□ 0.49
RAE1P78406 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RAE1P78406 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.09■□□□□ 0.49
RAE1P78406 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.09■□□□□ 0.49
RAE1P78406 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RAE1P78406 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.08■□□□□ 0.49
RAE1P78406 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RAE1P78406 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
RAE1P78406 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
RAE1P78406 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.08■□□□□ 0.48
RAE1P78406 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RAE1P78406 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RAE1P78406 FAM201B-201ENST00000458407 597 ntBASIC18.08■□□□□ 0.48
RAE1P78406 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.08■□□□□ 0.48
RAE1P78406 AC091390.4-202ENST00000476426 537 ntBASIC18.08■□□□□ 0.48
RAE1P78406 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RAE1P78406 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
RAE1P78406 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.08■□□□□ 0.48
RAE1P78406 AF186192.3-201ENST00000583427 947 ntBASIC18.08■□□□□ 0.48
RAE1P78406 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.08■□□□□ 0.48
RAE1P78406 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.08■□□□□ 0.48
RAE1P78406 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RAE1P78406 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RAE1P78406 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RAE1P78406 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.08■□□□□ 0.48
RAE1P78406 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RAE1P78406 RCC2P6-201ENST00000526625 1557 ntBASIC18.08■□□□□ 0.48
RAE1P78406 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RAE1P78406 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.08■□□□□ 0.48
RAE1P78406 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
RAE1P78406 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.08■□□□□ 0.48
RAE1P78406 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
RAE1P78406 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
RAE1P78406 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RAE1P78406 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.07■□□□□ 0.48
RAE1P78406 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.07■□□□□ 0.48
RAE1P78406 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RAE1P78406 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RAE1P78406 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RAE1P78406 PRORSD1P-201ENST00000295112 541 ntBASIC18.07■□□□□ 0.48
RAE1P78406 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RAE1P78406 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms