Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN1P58418 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLRN1P58418 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLRN1P58418 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CLRN1P58418 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.04■□□□□ 0.32
CLRN1P58418 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
CLRN1P58418 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CLRN1P58418 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.04■□□□□ 0.32
CLRN1P58418 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.04■□□□□ 0.32
CLRN1P58418 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.04■□□□□ 0.32
CLRN1P58418 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLRN1P58418 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.04■□□□□ 0.32
CLRN1P58418 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
CLRN1P58418 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CLRN1P58418 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CLRN1P58418 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CLRN1P58418 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.04■□□□□ 0.32
CLRN1P58418 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.04■□□□□ 0.32
CLRN1P58418 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CLRN1P58418 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
CLRN1P58418 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CLRN1P58418 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
CLRN1P58418 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.03■□□□□ 0.32
CLRN1P58418 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.03■□□□□ 0.32
CLRN1P58418 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.03■□□□□ 0.32
CLRN1P58418 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.03■□□□□ 0.32
CLRN1P58418 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
CLRN1P58418 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.03■□□□□ 0.32
CLRN1P58418 AL353807.1-201ENST00000427475 662 ntBASIC17.03■□□□□ 0.32
CLRN1P58418 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CLRN1P58418 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.03■□□□□ 0.32
CLRN1P58418 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 AC131212.4-201ENST00000623606 975 ntBASIC17.03■□□□□ 0.32
CLRN1P58418 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.03■□□□□ 0.32
CLRN1P58418 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.03■□□□□ 0.32
CLRN1P58418 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.03■□□□□ 0.32
CLRN1P58418 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CLRN1P58418 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN1P58418 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN1P58418 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CLRN1P58418 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.02■□□□□ 0.32
CLRN1P58418 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN1P58418 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.02■□□□□ 0.32
CLRN1P58418 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN1P58418 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN1P58418 NIFKP9-201ENST00000419265 221 ntBASIC17.02■□□□□ 0.32
CLRN1P58418 TSPY21P-201ENST00000433481 731 ntBASIC17.02■□□□□ 0.32
CLRN1P58418 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CLRN1P58418 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.02■□□□□ 0.32
CLRN1P58418 AL359736.2-201ENST00000621992 437 ntBASIC17.02■□□□□ 0.32
CLRN1P58418 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms