Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCPP55072 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.39■□□□□ 0.86
VCPP55072 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VCPP55072 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
VCPP55072 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VCPP55072 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.39■□□□□ 0.86
VCPP55072 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VCPP55072 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VCPP55072 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.86
VCPP55072 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.39■□□□□ 0.85
VCPP55072 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
VCPP55072 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 INGX-201ENST00000359239 846 ntBASIC20.39■□□□□ 0.85
VCPP55072 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.39■□□□□ 0.85
VCPP55072 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
VCPP55072 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.39■□□□□ 0.85
VCPP55072 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
VCPP55072 AC098818.2-201ENST00000564925 2320 ntBASIC20.39■□□□□ 0.85
VCPP55072 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
VCPP55072 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCPP55072 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VCPP55072 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.38■□□□□ 0.85
VCPP55072 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
VCPP55072 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
VCPP55072 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
VCPP55072 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.38■□□□□ 0.85
VCPP55072 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
VCPP55072 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 TSPY14P-201ENST00000303979 915 ntBASIC20.38■□□□□ 0.85
VCPP55072 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.38■□□□□ 0.85
VCPP55072 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
VCPP55072 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.38■□□□□ 0.85
VCPP55072 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
VCPP55072 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 CLEC4GP1-201ENST00000596555 870 ntBASIC20.38■□□□□ 0.85
VCPP55072 AC139887.4-201ENST00000607877 719 ntBASIC20.38■□□□□ 0.85
VCPP55072 FAM87A-204ENST00000613235 858 ntBASIC20.38■□□□□ 0.85
VCPP55072 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.38■□□□□ 0.85
VCPP55072 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
VCPP55072 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.38■□□□□ 0.85
VCPP55072 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.38■□□□□ 0.85
VCPP55072 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
VCPP55072 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.38■□□□□ 0.85
VCPP55072 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.38■□□□□ 0.85
VCPP55072 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCPP55072 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.38■□□□□ 0.85
VCPP55072 AP006587.1-201ENST00000534129 1502 ntBASIC20.37■□□□□ 0.85
VCPP55072 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.37■□□□□ 0.85
VCPP55072 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.37■□□□□ 0.85
VCPP55072 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
VCPP55072 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 PCED1CP-201ENST00000419887 785 ntBASIC20.37■□□□□ 0.85
VCPP55072 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.37■□□□□ 0.85
VCPP55072 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.37■□□□□ 0.85
VCPP55072 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
VCPP55072 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.37■□□□□ 0.85
VCPP55072 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCPP55072 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
VCPP55072 Z82202.1-201ENST00000623446 1880 ntBASIC20.37■□□□□ 0.85
VCPP55072 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.37■□□□□ 0.85
VCPP55072 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCPP55072 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms