Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.58■■□□□ 1.05
USP11P51784 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
USP11P51784 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.58■■□□□ 1.05
USP11P51784 AL353719.1-201ENST00000566847 864 ntBASIC21.58■■□□□ 1.05
USP11P51784 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
USP11P51784 AC133561.5-201ENST00000635547 218 ntBASIC21.58■■□□□ 1.05
USP11P51784 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.58■■□□□ 1.05
USP11P51784 AC116562.4-202ENST00000641738 218 ntBASIC21.58■■□□□ 1.05
USP11P51784 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.58■■□□□ 1.05
USP11P51784 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
USP11P51784 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
USP11P51784 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
USP11P51784 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
USP11P51784 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC21.58■■□□□ 1.04
USP11P51784 LINC01568-207ENST00000641790 1380 ntBASIC21.58■■□□□ 1.04
USP11P51784 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP11P51784 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP11P51784 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
USP11P51784 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.57■■□□□ 1.04
USP11P51784 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP11P51784 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP11P51784 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP11P51784 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP11P51784 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP11P51784 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.57■■□□□ 1.04
USP11P51784 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP11P51784 AC128688.1-201ENST00000487626 519 ntBASIC21.57■■□□□ 1.04
USP11P51784 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC21.57■■□□□ 1.04
USP11P51784 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.57■■□□□ 1.04
USP11P51784 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.57■■□□□ 1.04
USP11P51784 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.57■■□□□ 1.04
USP11P51784 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.57■■□□□ 1.04
USP11P51784 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.57■■□□□ 1.04
USP11P51784 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
USP11P51784 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
USP11P51784 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.57■■□□□ 1.04
USP11P51784 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
USP11P51784 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.57■■□□□ 1.04
USP11P51784 KRT8P3-201ENST00000519669 1449 ntBASIC21.56■■□□□ 1.04
USP11P51784 AC092338.2-201ENST00000568827 1415 ntBASIC21.56■■□□□ 1.04
USP11P51784 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP11P51784 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP11P51784 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
USP11P51784 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.56■■□□□ 1.04
USP11P51784 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
USP11P51784 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP11P51784 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP11P51784 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.56■■□□□ 1.04
USP11P51784 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP11P51784 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
USP11P51784 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
USP11P51784 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
USP11P51784 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
USP11P51784 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
USP11P51784 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP11P51784 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
USP11P51784 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.56■■□□□ 1.04
USP11P51784 KRT18P22-201ENST00000402024 1347 ntBASIC21.55■■□□□ 1.04
USP11P51784 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP11P51784 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP11P51784 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP11P51784 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP11P51784 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.55■■□□□ 1.04
USP11P51784 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.55■■□□□ 1.04
USP11P51784 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.55■■□□□ 1.04
USP11P51784 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
USP11P51784 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP11P51784 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.55■■□□□ 1.04
USP11P51784 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.55■■□□□ 1.04
USP11P51784 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.55■■□□□ 1.04
USP11P51784 LINC01023-201ENST00000606054 436 ntBASIC21.55■■□□□ 1.04
USP11P51784 AC010653.2-201ENST00000623505 997 ntBASIC21.55■■□□□ 1.04
USP11P51784 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.55■■□□□ 1.04
USP11P51784 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.55■■□□□ 1.04
USP11P51784 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
USP11P51784 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
USP11P51784 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
USP11P51784 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.55■■□□□ 1.04
USP11P51784 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.55■■□□□ 1.04
USP11P51784 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
USP11P51784 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
USP11P51784 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP11P51784 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21.54■■□□□ 1.04
USP11P51784 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP11P51784 AC007663.1-201ENST00000438948 1240 ntBASIC21.54■■□□□ 1.04
USP11P51784 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC21.54■■□□□ 1.04
USP11P51784 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.54■■□□□ 1.04
USP11P51784 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.54■■□□□ 1.04
USP11P51784 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.54■■□□□ 1.04
USP11P51784 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP11P51784 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.54■■□□□ 1.04
USP11P51784 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.54■■□□□ 1.04
USP11P51784 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP11P51784 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.54■■□□□ 1.04
USP11P51784 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP11P51784 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
USP11P51784 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
USP11P51784 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
USP11P51784 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
USP11P51784 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms