Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CX3CR1P49238 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.77■□□□□ 0.28
CX3CR1P49238 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CX3CR1P49238 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
CX3CR1P49238 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CX3CR1P49238 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC16.77■□□□□ 0.28
CX3CR1P49238 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.77■□□□□ 0.28
CX3CR1P49238 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 AC026366.1-201ENST00000488803 879 ntBASIC16.77■□□□□ 0.28
CX3CR1P49238 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.77■□□□□ 0.28
CX3CR1P49238 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CX3CR1P49238 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.77■□□□□ 0.28
CX3CR1P49238 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.77■□□□□ 0.28
CX3CR1P49238 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CX3CR1P49238 AC004264.1-201ENST00000608354 794 ntBASIC16.77■□□□□ 0.28
CX3CR1P49238 AC069544.1-201ENST00000609399 999 ntBASIC16.77■□□□□ 0.28
CX3CR1P49238 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.77■□□□□ 0.28
CX3CR1P49238 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.77■□□□□ 0.28
CX3CR1P49238 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
CX3CR1P49238 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.77■□□□□ 0.27
CX3CR1P49238 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CX3CR1P49238 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CX3CR1P49238 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CX3CR1P49238 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CX3CR1P49238 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CR1P49238 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.76■□□□□ 0.27
CX3CR1P49238 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CR1P49238 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.76■□□□□ 0.27
CX3CR1P49238 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CR1P49238 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.76■□□□□ 0.27
CX3CR1P49238 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CR1P49238 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CR1P49238 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CR1P49238 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.76■□□□□ 0.27
CX3CR1P49238 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CR1P49238 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CX3CR1P49238 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CR1P49238 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CX3CR1P49238 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.75■□□□□ 0.27
CX3CR1P49238 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.75■□□□□ 0.27
CX3CR1P49238 IRX1P1-201ENST00000438849 1838 ntBASIC16.75■□□□□ 0.27
CX3CR1P49238 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.75■□□□□ 0.27
CX3CR1P49238 FP475955.4-201ENST00000623131 1990 ntBASIC16.75■□□□□ 0.27
CX3CR1P49238 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.75■□□□□ 0.27
CX3CR1P49238 AC006333.2-201ENST00000607957 2099 ntBASIC16.75■□□□□ 0.27
CX3CR1P49238 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC16.75■□□□□ 0.27
CX3CR1P49238 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.75■□□□□ 0.27
CX3CR1P49238 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.75■□□□□ 0.27
CX3CR1P49238 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC16.75■□□□□ 0.27
CX3CR1P49238 MTDHP1-201ENST00000605323 784 ntBASIC16.75■□□□□ 0.27
CX3CR1P49238 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.75■□□□□ 0.27
CX3CR1P49238 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC16.75■□□□□ 0.27
CX3CR1P49238 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.75■□□□□ 0.27
CX3CR1P49238 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
CX3CR1P49238 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
CX3CR1P49238 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CX3CR1P49238 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
CX3CR1P49238 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CX3CR1P49238 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.74■□□□□ 0.27
CX3CR1P49238 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CX3CR1P49238 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CX3CR1P49238 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CX3CR1P49238 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CX3CR1P49238 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CX3CR1P49238 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.74■□□□□ 0.27
CX3CR1P49238 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.74■□□□□ 0.27
CX3CR1P49238 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CX3CR1P49238 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms