Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.85■□□□□ 0.77
PTPN9P43378 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.85■□□□□ 0.77
PTPN9P43378 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
PTPN9P43378 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
PTPN9P43378 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.85■□□□□ 0.77
PTPN9P43378 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.85■□□□□ 0.77
PTPN9P43378 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.85■□□□□ 0.77
PTPN9P43378 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
PTPN9P43378 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.85■□□□□ 0.77
PTPN9P43378 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTPN9P43378 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN9P43378 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN9P43378 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN9P43378 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN9P43378 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.84■□□□□ 0.77
PTPN9P43378 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
PTPN9P43378 AC006333.2-201ENST00000607957 2099 ntBASIC19.84■□□□□ 0.77
PTPN9P43378 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN9P43378 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN9P43378 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN9P43378 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.84■□□□□ 0.77
PTPN9P43378 AP003071.4-201ENST00000562276 1284 ntBASIC19.84■□□□□ 0.77
PTPN9P43378 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.84■□□□□ 0.77
PTPN9P43378 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.84■□□□□ 0.77
PTPN9P43378 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PTPN9P43378 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.84■□□□□ 0.77
PTPN9P43378 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTPN9P43378 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTPN9P43378 TNXA-203ENST00000507684 2038 ntBASIC19.83■□□□□ 0.77
PTPN9P43378 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.83■□□□□ 0.77
PTPN9P43378 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
PTPN9P43378 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTPN9P43378 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.83■□□□□ 0.77
PTPN9P43378 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PTPN9P43378 TSPY7P-201ENST00000431358 1114 ntBASIC19.83■□□□□ 0.77
PTPN9P43378 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTPN9P43378 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.83■□□□□ 0.77
PTPN9P43378 MIR4785-201ENST00000585005 73 ntBASIC19.83■□□□□ 0.77
PTPN9P43378 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
PTPN9P43378 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTPN9P43378 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PTPN9P43378 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PTPN9P43378 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PTPN9P43378 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTPN9P43378 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTPN9P43378 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN9P43378 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
PTPN9P43378 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN9P43378 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
PTPN9P43378 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN9P43378 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN9P43378 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN9P43378 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.82■□□□□ 0.76
PTPN9P43378 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.82■□□□□ 0.76
PTPN9P43378 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.82■□□□□ 0.76
PTPN9P43378 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.82■□□□□ 0.76
PTPN9P43378 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN9P43378 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.82■□□□□ 0.76
PTPN9P43378 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.82■□□□□ 0.76
PTPN9P43378 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN9P43378 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN9P43378 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.82■□□□□ 0.76
PTPN9P43378 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
PTPN9P43378 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTPN9P43378 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 AC087289.5-201ENST00000586076 3175 ntBASIC19.81■□□□□ 0.76
PTPN9P43378 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
PTPN9P43378 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.81■□□□□ 0.76
PTPN9P43378 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
PTPN9P43378 SNORA78-201ENST00000459373 127 ntBASIC19.81■□□□□ 0.76
PTPN9P43378 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.81■□□□□ 0.76
PTPN9P43378 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.81■□□□□ 0.76
PTPN9P43378 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
PTPN9P43378 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.81■□□□□ 0.76
PTPN9P43378 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTPN9P43378 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN9P43378 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTPN9P43378 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.8■□□□□ 0.76
PTPN9P43378 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
PTPN9P43378 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
PTPN9P43378 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms