Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
CLIP1P30622 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CLIP1P30622 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CLIP1P30622 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CLIP1P30622 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CLIP1P30622 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC30.29■■■□□ 2.44
CLIP1P30622 AC036111.1-201ENST00000533973 1582 ntBASIC30.29■■■□□ 2.44
CLIP1P30622 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
CLIP1P30622 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC30.29■■■□□ 2.44
CLIP1P30622 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
CLIP1P30622 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
CLIP1P30622 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
CLIP1P30622 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC30.29■■■□□ 2.44
CLIP1P30622 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CLIP1P30622 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC30.28■■■□□ 2.44
CLIP1P30622 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC30.28■■■□□ 2.44
CLIP1P30622 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CLIP1P30622 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CLIP1P30622 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
CLIP1P30622 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CLIP1P30622 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
CLIP1P30622 SAPCD2P2-201ENST00000431719 1174 ntBASIC30.28■■■□□ 2.44
CLIP1P30622 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CLIP1P30622 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC30.28■■■□□ 2.44
CLIP1P30622 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC30.28■■■□□ 2.44
CLIP1P30622 AC093484.2-201ENST00000580996 2166 ntBASIC30.27■■■□□ 2.44
CLIP1P30622 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC30.27■■■□□ 2.44
CLIP1P30622 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CLIP1P30622 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC30.27■■■□□ 2.44
CLIP1P30622 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CLIP1P30622 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC30.27■■■□□ 2.44
CLIP1P30622 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
CLIP1P30622 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC30.27■■■□□ 2.44
CLIP1P30622 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
CLIP1P30622 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
CLIP1P30622 Telomerase-vert.1-201ENST00000363312 438 ntBASIC30.27■■■□□ 2.44
CLIP1P30622 AL023284.2-201ENST00000405850 579 ntBASIC30.27■■■□□ 2.44
CLIP1P30622 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC30.27■■■□□ 2.44
CLIP1P30622 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC30.27■■■□□ 2.44
CLIP1P30622 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC30.27■■■□□ 2.44
CLIP1P30622 AC091076.1-201ENST00000610741 619 ntBASIC30.27■■■□□ 2.44
CLIP1P30622 AL358472.4-201ENST00000633140 710 ntBASIC30.27■■■□□ 2.44
CLIP1P30622 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
CLIP1P30622 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC30.27■■■□□ 2.44
CLIP1P30622 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC30.27■■■□□ 2.44
CLIP1P30622 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CLIP1P30622 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CLIP1P30622 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC30.26■■■□□ 2.43
CLIP1P30622 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
CLIP1P30622 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CLIP1P30622 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC30.26■■■□□ 2.43
CLIP1P30622 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC30.26■■■□□ 2.43
CLIP1P30622 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC30.26■■■□□ 2.43
CLIP1P30622 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC30.26■■■□□ 2.43
CLIP1P30622 AC011558.1-201ENST00000623459 338 ntBASIC30.26■■■□□ 2.43
CLIP1P30622 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC30.26■■■□□ 2.43
CLIP1P30622 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CLIP1P30622 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC30.26■■■□□ 2.43
CLIP1P30622 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC30.26■■■□□ 2.43
CLIP1P30622 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC30.26■■■□□ 2.43
CLIP1P30622 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
CLIP1P30622 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
CLIP1P30622 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC30.25■■■□□ 2.43
CLIP1P30622 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC30.25■■■□□ 2.43
CLIP1P30622 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CLIP1P30622 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC30.25■■■□□ 2.43
CLIP1P30622 RNF152P1-201ENST00000397754 604 ntBASIC30.25■■■□□ 2.43
CLIP1P30622 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC30.25■■■□□ 2.43
CLIP1P30622 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CLIP1P30622 NEK4P2-201ENST00000580004 1012 ntBASIC30.25■■■□□ 2.43
CLIP1P30622 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC30.25■■■□□ 2.43
CLIP1P30622 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CLIP1P30622 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC30.25■■■□□ 2.43
CLIP1P30622 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CLIP1P30622 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC30.24■■■□□ 2.43
CLIP1P30622 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 UPK3BP1-201ENST00000428678 509 ntBASIC30.24■■■□□ 2.43
CLIP1P30622 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC30.24■■■□□ 2.43
CLIP1P30622 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC30.24■■■□□ 2.43
CLIP1P30622 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 UBQLN4P1-201ENST00000461599 1801 ntBASIC30.24■■■□□ 2.43
CLIP1P30622 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC30.24■■■□□ 2.43
CLIP1P30622 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC30.24■■■□□ 2.43
CLIP1P30622 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CLIP1P30622 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC30.24■■■□□ 2.43
CLIP1P30622 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
CLIP1P30622 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC30.23■■■□□ 2.43
CLIP1P30622 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CLIP1P30622 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC30.23■■■□□ 2.43
CLIP1P30622 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC30.23■■■□□ 2.43
CLIP1P30622 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CLIP1P30622 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC30.23■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms