Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
COL4A1P02462 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL4A1P02462 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
COL4A1P02462 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC23.38■■□□□ 1.33
COL4A1P02462 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
COL4A1P02462 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
COL4A1P02462 AL450487.1-201ENST00000426799 995 ntBASIC23.38■■□□□ 1.33
COL4A1P02462 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC23.38■■□□□ 1.33
COL4A1P02462 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC23.38■■□□□ 1.33
COL4A1P02462 MIR3180-1-201ENST00000580374 94 ntBASIC23.38■■□□□ 1.33
COL4A1P02462 MIR3180-3-201ENST00000584616 94 ntBASIC23.38■■□□□ 1.33
COL4A1P02462 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
COL4A1P02462 AC024243.1-201ENST00000609234 778 ntBASIC23.38■■□□□ 1.33
COL4A1P02462 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC23.38■■□□□ 1.33
COL4A1P02462 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC23.38■■□□□ 1.33
COL4A1P02462 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC23.38■■□□□ 1.33
COL4A1P02462 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
COL4A1P02462 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL4A1P02462 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL4A1P02462 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
COL4A1P02462 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL4A1P02462 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL4A1P02462 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC23.38■■□□□ 1.33
COL4A1P02462 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC23.38■■□□□ 1.33
COL4A1P02462 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
COL4A1P02462 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL4A1P02462 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC23.38■■□□□ 1.33
COL4A1P02462 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.37■■□□□ 1.33
COL4A1P02462 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC23.37■■□□□ 1.33
COL4A1P02462 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC23.37■■□□□ 1.33
COL4A1P02462 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC23.37■■□□□ 1.33
COL4A1P02462 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 AL157888.1-201ENST00000631930 593 ntBASIC23.37■■□□□ 1.33
COL4A1P02462 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
COL4A1P02462 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC23.36■■□□□ 1.33
COL4A1P02462 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A1P02462 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A1P02462 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC23.36■■□□□ 1.33
COL4A1P02462 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A1P02462 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A1P02462 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC23.36■■□□□ 1.33
COL4A1P02462 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A1P02462 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC23.36■■□□□ 1.33
COL4A1P02462 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A1P02462 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC23.36■■□□□ 1.33
COL4A1P02462 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC23.36■■□□□ 1.33
COL4A1P02462 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A1P02462 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC23.36■■□□□ 1.33
COL4A1P02462 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL4A1P02462 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC23.36■■□□□ 1.33
COL4A1P02462 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A1P02462 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
COL4A1P02462 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A1P02462 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A1P02462 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A1P02462 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC23.35■■□□□ 1.33
COL4A1P02462 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC23.35■■□□□ 1.33
COL4A1P02462 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A1P02462 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A1P02462 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A1P02462 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A1P02462 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A1P02462 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A1P02462 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A1P02462 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC23.35■■□□□ 1.33
COL4A1P02462 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A1P02462 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC23.35■■□□□ 1.33
COL4A1P02462 BCL10-202ENST00000620248 774 ntTSL 5 BASIC23.35■■□□□ 1.33
COL4A1P02462 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A1P02462 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL4A1P02462 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A1P02462 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A1P02462 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC23.34■■□□□ 1.33
COL4A1P02462 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A1P02462 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A1P02462 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A1P02462 AP002383.4-201ENST00000442518 975 ntBASIC23.34■■□□□ 1.33
COL4A1P02462 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC23.34■■□□□ 1.33
COL4A1P02462 MIR3180-5-201ENST00000583743 153 ntBASIC23.34■■□□□ 1.33
COL4A1P02462 AC092119.3-201ENST00000612618 583 ntBASIC23.34■■□□□ 1.33
COL4A1P02462 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC23.34■■□□□ 1.33
COL4A1P02462 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC23.34■■□□□ 1.33
COL4A1P02462 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A1P02462 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A1P02462 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
COL4A1P02462 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL4A1P02462 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC23.34■■□□□ 1.33
COL4A1P02462 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL4A1P02462 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms