Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC23.02■■□□□ 1.28
COL1A1P02452 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL1A1P02452 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL1A1P02452 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
COL1A1P02452 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL1A1P02452 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC23.02■■□□□ 1.28
COL1A1P02452 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC23.02■■□□□ 1.28
COL1A1P02452 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC23.02■■□□□ 1.28
COL1A1P02452 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
COL1A1P02452 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL1A1P02452 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC23.02■■□□□ 1.28
COL1A1P02452 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
COL1A1P02452 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC23.02■■□□□ 1.27
COL1A1P02452 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL1A1P02452 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL1A1P02452 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
COL1A1P02452 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
COL1A1P02452 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL1A1P02452 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL1A1P02452 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
COL1A1P02452 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC23.01■■□□□ 1.27
COL1A1P02452 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC23.01■■□□□ 1.27
COL1A1P02452 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
COL1A1P02452 TPM4P1-201ENST00000436100 807 ntBASIC23.01■■□□□ 1.27
COL1A1P02452 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC23.01■■□□□ 1.27
COL1A1P02452 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC23.01■■□□□ 1.27
COL1A1P02452 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
COL1A1P02452 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
COL1A1P02452 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC23.01■■□□□ 1.27
COL1A1P02452 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC23.01■■□□□ 1.27
COL1A1P02452 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.01■■□□□ 1.27
COL1A1P02452 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL1A1P02452 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL1A1P02452 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23■■□□□ 1.27
COL1A1P02452 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL1A1P02452 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL1A1P02452 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL1A1P02452 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC23■■□□□ 1.27
COL1A1P02452 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL1A1P02452 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC23■■□□□ 1.27
COL1A1P02452 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC23■■□□□ 1.27
COL1A1P02452 NEK4P2-201ENST00000580004 1012 ntBASIC23■■□□□ 1.27
COL1A1P02452 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
COL1A1P02452 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL1A1P02452 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23■■□□□ 1.27
COL1A1P02452 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC23■■□□□ 1.27
COL1A1P02452 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
COL1A1P02452 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23■■□□□ 1.27
COL1A1P02452 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC23■■□□□ 1.27
COL1A1P02452 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
COL1A1P02452 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL1A1P02452 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC22.99■■□□□ 1.27
COL1A1P02452 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC22.99■■□□□ 1.27
COL1A1P02452 CD81-212ENST00000526072 1172 ntTSL 5 BASIC22.99■■□□□ 1.27
COL1A1P02452 GCSHP2-201ENST00000560971 527 ntBASIC22.99■■□□□ 1.27
COL1A1P02452 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC22.99■■□□□ 1.27
COL1A1P02452 DFFB-212ENST00000625756 649 ntTSL 5 BASIC22.99■■□□□ 1.27
COL1A1P02452 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL1A1P02452 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
COL1A1P02452 AFG3L1P-217ENST00000557444 2447 ntBASIC22.99■■□□□ 1.27
COL1A1P02452 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
COL1A1P02452 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
COL1A1P02452 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC22.99■■□□□ 1.27
COL1A1P02452 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC22.99■■□□□ 1.27
COL1A1P02452 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
COL1A1P02452 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC22.99■■□□□ 1.27
COL1A1P02452 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
COL1A1P02452 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC22.99■■□□□ 1.27
COL1A1P02452 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL1A1P02452 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
COL1A1P02452 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL1A1P02452 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC22.98■■□□□ 1.27
COL1A1P02452 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC22.98■■□□□ 1.27
COL1A1P02452 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC22.98■■□□□ 1.27
COL1A1P02452 AL136038.3-201ENST00000561909 1096 ntBASIC22.98■■□□□ 1.27
COL1A1P02452 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC22.98■■□□□ 1.27
COL1A1P02452 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC22.98■■□□□ 1.27
COL1A1P02452 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL1A1P02452 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC22.98■■□□□ 1.27
COL1A1P02452 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL1A1P02452 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC22.98■■□□□ 1.27
COL1A1P02452 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL1A1P02452 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL1A1P02452 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC22.98■■□□□ 1.27
COL1A1P02452 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC22.98■■□□□ 1.27
COL1A1P02452 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
COL1A1P02452 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC22.98■■□□□ 1.27
COL1A1P02452 AL023284.2-201ENST00000405850 579 ntBASIC22.98■■□□□ 1.27
COL1A1P02452 SPDYE13P-201ENST00000445314 798 ntBASIC22.98■■□□□ 1.27
COL1A1P02452 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC22.98■■□□□ 1.27
COL1A1P02452 VENTXP5-201ENST00000523979 775 ntBASIC22.98■■□□□ 1.27
COL1A1P02452 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC22.98■■□□□ 1.27
COL1A1P02452 HYMAI.1-201ENST00000620949 238 ntBASIC22.98■■□□□ 1.27
COL1A1P02452 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC22.98■■□□□ 1.27
COL1A1P02452 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL1A1P02452 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL1A1P02452 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL1A1P02452 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL1A1P02452 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL1A1P02452 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms