Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.41■□□□□ 0.54
LDLRP01130 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.41■□□□□ 0.54
LDLRP01130 MIR4785-201ENST00000585005 73 ntBASIC18.41■□□□□ 0.54
LDLRP01130 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
LDLRP01130 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LDLRP01130 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.41■□□□□ 0.54
LDLRP01130 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LDLRP01130 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.41■□□□□ 0.54
LDLRP01130 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
LDLRP01130 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LDLRP01130 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.4■□□□□ 0.54
LDLRP01130 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LDLRP01130 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LDLRP01130 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
LDLRP01130 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.4■□□□□ 0.54
LDLRP01130 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.4■□□□□ 0.54
LDLRP01130 AL356652.1-201ENST00000615962 565 ntBASIC18.4■□□□□ 0.54
LDLRP01130 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
LDLRP01130 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
LDLRP01130 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.4■□□□□ 0.54
LDLRP01130 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
LDLRP01130 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LDLRP01130 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
LDLRP01130 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDLRP01130 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.4■□□□□ 0.54
LDLRP01130 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LDLRP01130 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LDLRP01130 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
LDLRP01130 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LDLRP01130 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.39■□□□□ 0.53
LDLRP01130 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.39■□□□□ 0.53
LDLRP01130 TSPY15P-201ENST00000457163 923 ntBASIC18.39■□□□□ 0.53
LDLRP01130 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LDLRP01130 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.39■□□□□ 0.53
LDLRP01130 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.39■□□□□ 0.53
LDLRP01130 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
LDLRP01130 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
LDLRP01130 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
LDLRP01130 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
LDLRP01130 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.39■□□□□ 0.53
LDLRP01130 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.39■□□□□ 0.53
LDLRP01130 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.39■□□□□ 0.53
LDLRP01130 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 KRT16P6-202ENST00000425692 1426 ntBASIC18.39■□□□□ 0.53
LDLRP01130 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDLRP01130 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.39■□□□□ 0.53
LDLRP01130 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LDLRP01130 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.38■□□□□ 0.53
LDLRP01130 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.38■□□□□ 0.53
LDLRP01130 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.38■□□□□ 0.53
LDLRP01130 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
LDLRP01130 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
LDLRP01130 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
LDLRP01130 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.38■□□□□ 0.53
LDLRP01130 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.38■□□□□ 0.53
LDLRP01130 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 KRT18P68-201ENST00000392293 1000 ntBASIC18.38■□□□□ 0.53
LDLRP01130 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LDLRP01130 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms