Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
PCF11O94913 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCF11O94913 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC29.8■■■□□ 2.36
PCF11O94913 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
PCF11O94913 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC29.79■■■□□ 2.36
PCF11O94913 LINC01311-201ENST00000565162 1445 ntBASIC29.79■■■□□ 2.36
PCF11O94913 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
PCF11O94913 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC29.79■■■□□ 2.36
PCF11O94913 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC29.79■■■□□ 2.36
PCF11O94913 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC29.79■■■□□ 2.36
PCF11O94913 AC012313.10-201ENST00000623509 926 ntBASIC29.79■■■□□ 2.36
PCF11O94913 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
PCF11O94913 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC29.79■■■□□ 2.36
PCF11O94913 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
PCF11O94913 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC29.79■■■□□ 2.36
PCF11O94913 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCF11O94913 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC29.78■■■□□ 2.36
PCF11O94913 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC29.78■■■□□ 2.36
PCF11O94913 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCF11O94913 FXN-203ENST00000396366 922 ntTSL 2 BASIC29.78■■■□□ 2.36
PCF11O94913 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
PCF11O94913 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC29.78■■■□□ 2.36
PCF11O94913 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC29.78■■■□□ 2.36
PCF11O94913 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC29.78■■■□□ 2.36
PCF11O94913 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
PCF11O94913 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
PCF11O94913 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC29.78■■■□□ 2.36
PCF11O94913 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC29.78■■■□□ 2.36
PCF11O94913 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCF11O94913 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
PCF11O94913 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC29.78■■■□□ 2.36
PCF11O94913 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC29.78■■■□□ 2.36
PCF11O94913 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCF11O94913 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCF11O94913 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCF11O94913 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC29.78■■■□□ 2.36
PCF11O94913 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
PCF11O94913 AL645929.1-201ENST00000420084 975 ntBASIC29.77■■■□□ 2.36
PCF11O94913 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC29.77■■■□□ 2.36
PCF11O94913 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC29.77■■■□□ 2.36
PCF11O94913 AL136038.3-201ENST00000561909 1096 ntBASIC29.77■■■□□ 2.36
PCF11O94913 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
PCF11O94913 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
PCF11O94913 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC29.77■■■□□ 2.36
PCF11O94913 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
PCF11O94913 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC29.77■■■□□ 2.36
PCF11O94913 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
PCF11O94913 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC29.77■■■□□ 2.36
PCF11O94913 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC29.77■■■□□ 2.36
PCF11O94913 KRT8P3-201ENST00000519669 1449 ntBASIC29.77■■■□□ 2.36
PCF11O94913 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
PCF11O94913 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC29.77■■■□□ 2.36
PCF11O94913 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
PCF11O94913 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
PCF11O94913 RASA4DP-201ENST00000460726 1199 ntBASIC29.77■■■□□ 2.36
PCF11O94913 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC29.76■■■□□ 2.36
PCF11O94913 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
PCF11O94913 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC29.76■■■□□ 2.36
PCF11O94913 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
PCF11O94913 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC29.76■■■□□ 2.35
PCF11O94913 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC29.76■■■□□ 2.35
PCF11O94913 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
PCF11O94913 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC29.76■■■□□ 2.35
PCF11O94913 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC29.76■■■□□ 2.35
PCF11O94913 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
PCF11O94913 MCCD1P1-208ENST00000445732 328 ntBASIC29.76■■■□□ 2.35
PCF11O94913 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC29.76■■■□□ 2.35
PCF11O94913 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC29.76■■■□□ 2.35
PCF11O94913 FGF14-AS2-201ENST00000606448 1074 ntBASIC29.76■■■□□ 2.35
PCF11O94913 NDUFV2-AS1-203ENST00000608008 779 ntBASIC29.76■■■□□ 2.35
PCF11O94913 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC29.76■■■□□ 2.35
PCF11O94913 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
PCF11O94913 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC29.76■■■□□ 2.35
PCF11O94913 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC29.76■■■□□ 2.35
PCF11O94913 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC29.76■■■□□ 2.35
PCF11O94913 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
PCF11O94913 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC29.75■■■□□ 2.35
PCF11O94913 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
PCF11O94913 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC29.75■■■□□ 2.35
PCF11O94913 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
PCF11O94913 FDX1P1-201ENST00000449115 551 ntBASIC29.75■■■□□ 2.35
PCF11O94913 IRF5-214ENST00000613821 595 ntTSL 5 BASIC29.75■■■□□ 2.35
PCF11O94913 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC29.75■■■□□ 2.35
PCF11O94913 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC29.75■■■□□ 2.35
PCF11O94913 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC29.74■■■□□ 2.35
PCF11O94913 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
PCF11O94913 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC29.74■■■□□ 2.35
PCF11O94913 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
PCF11O94913 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
PCF11O94913 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC29.74■■■□□ 2.35
PCF11O94913 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC29.74■■■□□ 2.35
PCF11O94913 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC29.74■■■□□ 2.35
PCF11O94913 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC29.74■■■□□ 2.35
PCF11O94913 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
PCF11O94913 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC29.74■■■□□ 2.35
PCF11O94913 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC29.74■■■□□ 2.35
PCF11O94913 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
PCF11O94913 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC29.74■■■□□ 2.35
PCF11O94913 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC29.74■■■□□ 2.35
PCF11O94913 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC29.74■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms