Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.13■□□□□ 0.65
SHOX2O60902 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHOX2O60902 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SHOX2O60902 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHOX2O60902 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.13■□□□□ 0.65
SHOX2O60902 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SHOX2O60902 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
SHOX2O60902 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SHOX2O60902 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHOX2O60902 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.12■□□□□ 0.65
SHOX2O60902 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.12■□□□□ 0.65
SHOX2O60902 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHOX2O60902 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHOX2O60902 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SHOX2O60902 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
SHOX2O60902 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHOX2O60902 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.12■□□□□ 0.65
SHOX2O60902 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.12■□□□□ 0.65
SHOX2O60902 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHOX2O60902 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.12■□□□□ 0.65
SHOX2O60902 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.12■□□□□ 0.65
SHOX2O60902 CDV3P1-201ENST00000471403 739 ntBASIC19.12■□□□□ 0.65
SHOX2O60902 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.12■□□□□ 0.65
SHOX2O60902 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.12■□□□□ 0.65
SHOX2O60902 AC110285.6-201ENST00000617652 491 ntBASIC19.12■□□□□ 0.65
SHOX2O60902 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SHOX2O60902 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHOX2O60902 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
SHOX2O60902 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.12■□□□□ 0.65
SHOX2O60902 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHOX2O60902 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SHOX2O60902 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.12■□□□□ 0.65
SHOX2O60902 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 AC138028.4-201ENST00000564984 1845 ntBASIC19.11■□□□□ 0.65
SHOX2O60902 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.11■□□□□ 0.65
SHOX2O60902 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
SHOX2O60902 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.11■□□□□ 0.65
SHOX2O60902 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.11■□□□□ 0.65
SHOX2O60902 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SHOX2O60902 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.11■□□□□ 0.65
SHOX2O60902 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.11■□□□□ 0.65
SHOX2O60902 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 NKILA-202ENST00000614771 2598 ntBASIC19.11■□□□□ 0.65
SHOX2O60902 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 AC104417.2-201ENST00000562989 1793 ntBASIC19.11■□□□□ 0.65
SHOX2O60902 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 AC018695.7-201ENST00000624587 2492 ntBASIC19.11■□□□□ 0.65
SHOX2O60902 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SHOX2O60902 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.11■□□□□ 0.65
SHOX2O60902 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SHOX2O60902 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SHOX2O60902 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
SHOX2O60902 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHOX2O60902 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
SHOX2O60902 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHOX2O60902 CYP21A1P-202ENST00000354927 1481 ntBASIC19.1■□□□□ 0.65
SHOX2O60902 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHOX2O60902 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SHOX2O60902 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.1■□□□□ 0.65
SHOX2O60902 AC022211.2-201ENST00000585075 2527 ntBASIC19.1■□□□□ 0.65
SHOX2O60902 RASA4CP-201ENST00000424092 1398 ntBASIC19.1■□□□□ 0.65
SHOX2O60902 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SHOX2O60902 AL118508.1-201ENST00000613502 2345 ntBASIC19.1■□□□□ 0.65
SHOX2O60902 EDA-201ENST00000338901 1233 ntBASIC19.1■□□□□ 0.65
SHOX2O60902 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SHOX2O60902 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.1■□□□□ 0.65
SHOX2O60902 MIR939-201ENST00000401314 82 ntBASIC19.1■□□□□ 0.65
SHOX2O60902 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.1■□□□□ 0.65
SHOX2O60902 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.1■□□□□ 0.65
SHOX2O60902 AC079140.4-201ENST00000507448 529 ntBASIC19.1■□□□□ 0.65
SHOX2O60902 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHOX2O60902 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHOX2O60902 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.1■□□□□ 0.65
SHOX2O60902 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHOX2O60902 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SHOX2O60902 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.1■□□□□ 0.65
SHOX2O60902 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SHOX2O60902 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
SHOX2O60902 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SHOX2O60902 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.09■□□□□ 0.65
SHOX2O60902 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SHOX2O60902 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SHOX2O60902 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHOX2O60902 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHOX2O60902 HLA-G-202ENST00000376815 851 ntBASIC19.09■□□□□ 0.65
SHOX2O60902 HLA-G-203ENST00000376818 1127 ntBASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms