Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.27■□□□□ 0.36
SSX4O60224 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.27■□□□□ 0.36
SSX4O60224 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SSX4O60224 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.27■□□□□ 0.35
SSX4O60224 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SSX4O60224 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SSX4O60224 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.27■□□□□ 0.35
SSX4O60224 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SSX4O60224 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
SSX4O60224 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.27■□□□□ 0.35
SSX4O60224 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
SSX4O60224 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SSX4O60224 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
SSX4O60224 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
SSX4O60224 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.26■□□□□ 0.35
SSX4O60224 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SSX4O60224 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
SSX4O60224 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
SSX4O60224 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SSX4O60224 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.26■□□□□ 0.35
SSX4O60224 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.26■□□□□ 0.35
SSX4O60224 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.26■□□□□ 0.35
SSX4O60224 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.26■□□□□ 0.35
SSX4O60224 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 POM121L13P-201ENST00000422362 380 ntBASIC17.26■□□□□ 0.35
SSX4O60224 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.26■□□□□ 0.35
SSX4O60224 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
SSX4O60224 AC067852.2-201ENST00000590513 2313 ntBASIC17.26■□□□□ 0.35
SSX4O60224 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.26■□□□□ 0.35
SSX4O60224 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SSX4O60224 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.25■□□□□ 0.35
SSX4O60224 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SSX4O60224 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.25■□□□□ 0.35
SSX4O60224 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SSX4O60224 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.25■□□□□ 0.35
SSX4O60224 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.25■□□□□ 0.35
SSX4O60224 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.25■□□□□ 0.35
SSX4O60224 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.25■□□□□ 0.35
SSX4O60224 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.25■□□□□ 0.35
SSX4O60224 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.25■□□□□ 0.35
SSX4O60224 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SSX4O60224 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SSX4O60224 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.25■□□□□ 0.35
SSX4O60224 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.25■□□□□ 0.35
SSX4O60224 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SSX4O60224 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SSX4O60224 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SSX4O60224 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SSX4O60224 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
SSX4O60224 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.24■□□□□ 0.35
SSX4O60224 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.24■□□□□ 0.35
SSX4O60224 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 PGM5P4-201ENST00000421970 445 ntBASIC17.24■□□□□ 0.35
SSX4O60224 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.24■□□□□ 0.35
SSX4O60224 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SSX4O60224 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.24■□□□□ 0.35
SSX4O60224 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.24■□□□□ 0.35
SSX4O60224 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SSX4O60224 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SSX4O60224 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms