Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.94□□□□□ -1.94
TNFRSF4P43489 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.94□□□□□ -1.94
TNFRSF4P43489 RPF2P2-201ENST00000504693 896 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 MTND4LP22-201ENST00000508209 276 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC2.94□□□□□ -1.94
TNFRSF4P43489 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.94□□□□□ -1.94
TNFRSF4P43489 AC124947.2-202ENST00000552735 133 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 AL355836.1-201ENST00000555951 870 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 CYCSP39-201ENST00000565821 309 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 AC012435.1-202ENST00000568772 240 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 AC008507.1-201ENST00000587506 734 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.94□□□□□ -1.94
TNFRSF4P43489 AC079089.3-201ENST00000603094 673 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 AP000811.1-201ENST00000603803 651 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 AC022079.1-201ENST00000621546 602 ntBASIC2.94□□□□□ -1.94
TNFRSF4P43489 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
TNFRSF4P43489 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
TNFRSF4P43489 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.94□□□□□ -1.94
TNFRSF4P43489 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
TNFRSF4P43489 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 AL138713.1-201ENST00000624026 2130 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC233263.6-201ENST00000631132 1963 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 AL391994.1-201ENST00000254724 282 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
TNFRSF4P43489 MIR449A-201ENST00000362113 91 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 RNU6-223P-201ENST00000362830 107 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 RNU6-433P-201ENST00000363216 104 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 PARD3-204ENST00000374768 799 ntTSL 3 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 RNU4-72P-201ENST00000410754 173 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AL359704.1-201ENST00000411586 781 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 RPL7P8-201ENST00000411964 730 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC019097.1-201ENST00000424783 735 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 AL606662.1-201ENST00000445763 553 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 BZW1P2-201ENST00000473537 826 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC072039.1-201ENST00000477611 581 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 KCTD9P5-201ENST00000504141 1170 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 RNU6-1256P-201ENST00000516539 103 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 RNU6-678P-201ENST00000516832 109 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 RNU6-232P-201ENST00000517144 64 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 OR7K1P-201ENST00000546439 926 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC090616.2-202ENST00000584248 222 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC013553.2-201ENST00000604244 589 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AL035413.2-201ENST00000604801 525 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AC018714.1-201ENST00000605028 208 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 AL031667.3-201ENST00000620124 655 ntBASIC2.93□□□□□ -1.94
TNFRSF4P43489 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
TNFRSF4P43489 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC2.93□□□□□ -1.94
TNFRSF4P43489 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
TNFRSF4P43489 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.93□□□□□ -1.94
TNFRSF4P43489 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
TNFRSF4P43489 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 SNORD56.3-201ENST00000363507 71 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 RNA5SP252-201ENST00000391131 119 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 HMGB1P11-201ENST00000413899 637 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 FAM103A2P-201ENST00000444122 354 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 NIPA2P5-201ENST00000452282 464 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 AL031183.1-201ENST00000457667 207 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 AC004801.2-202ENST00000463559 283 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 AC104472.2-201ENST00000469035 601 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 BET1P1-201ENST00000482276 359 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 AC135721.1-201ENST00000497954 479 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 RNU6-759P-201ENST00000516740 103 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 AP004247.1-201ENST00000531556 1289 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
TNFRSF4P43489 OR4H12P-201ENST00000556269 907 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 HMGB1P6-201ENST00000569046 646 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 MTCO3P24-201ENST00000572729 782 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.92□□□□□ -1.94
TNFRSF4P43489 UBE2L4-201ENST00000587688 464 ntBASIC2.92□□□□□ -1.94
TNFRSF4P43489 AC013476.2-201ENST00000614456 459 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 156.5 ms