RNA–Protein interactions for RNA: ENST00000554584.5

SYNE2-212, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5 BASIC

Gene SYNE2, Length 20,508 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-212ENST00000554584 DCAF8L2P0C7V8 631 aa6.19□□□□□ -1.42
SYNE2-212ENST00000554584 EHMT2Q96KQ7 1210 aa6.12□□□□□ -1.43
SYNE2-212ENST00000554584 TTBK1Q5TCY1 1321 aaPredicted RBP5.8□□□□□ -1.48
SYNE2-212ENST00000554584 RANGAP1P46060 587 aaPredicted RBP5.68□□□□□ -1.5
SYNE2-212ENST00000554584 SHROOM4Q9ULL8 1493 aa5.58□□□□□ -1.52
SYNE2-212ENST00000554584 CHIC1Q5VXU3 224 aa5.57□□□□□ -1.52
SYNE2-212ENST00000554584 MYT1Q01538 1121 aa5.57□□□□□ -1.52
SYNE2-212ENST00000554584 SUPT5HO00267 1087 aaKnown RBP5.56□□□□□ -1.52
SYNE2-212ENST00000554584 CNGB1Q14028 1251 aaPredicted RBP5.52□□□□□ -1.53
SYNE2-212ENST00000554584 FAM9AQ8IZU1 332 aaPredicted RBP5.5□□□□□ -1.53
SYNE2-212ENST00000554584 ATP1B4Q9UN42 357 aaPredicted RBP5.46□□□□□ -1.54
SYNE2-212ENST00000554584 PPARGC1BQ86YN6 1023 aaKnown RBP5.42□□□□□ -1.54
SYNE2-212ENST00000554584 PLPPR3Q6T4P5 718 aa5.4□□□□□ -1.55
SYNE2-212ENST00000554584 BCL11AQ9H165 835 aa5.34□□□□□ -1.55
SYNE2-212ENST00000554584 POLR3GLQ9BT43 218 aa5.32□□□□□ -1.56
SYNE2-212ENST00000554584 SENP3Q9H4L4 574 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-212ENST00000554584 MYT1LQ9UL68 1186 aa5.31□□□□□ -1.56
SYNE2-212ENST00000554584 ERICH6Q7L0X2 663 aa5.29□□□□□ -1.56
SYNE2-212ENST00000554584 PLEKHG5O94827 1062 aa5.27□□□□□ -1.57
SYNE2-212ENST00000554584 YTHDC1Q96MU7 727 aaKnown RBP5.26□□□□□ -1.57
SYNE2-212ENST00000554584 PCGF6Q9BYE7 350 aa5.25□□□□□ -1.57
SYNE2-212ENST00000554584 SLC4A1APQ9BWU0 796 aaKnown RBP5.25□□□□□ -1.57
SYNE2-212ENST00000554584 ITGAEP38570 1179 aa5.22□□□□□ -1.57
SYNE2-212ENST00000554584 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.15□□□□□ -1.59
SYNE2-212ENST00000554584 HNRNPUL2Q1KMD3 747 aaKnown RBP5.15□□□□□ -1.59
SYNE2-212ENST00000554584 PELP1Q8IZL8 1130 aaKnown RBP5.14□□□□□ -1.59
SYNE2-212ENST00000554584 SLC24A1O60721 1099 aa5.13□□□□□ -1.59
SYNE2-212ENST00000554584 ARID3CA6NKF2 412 aa5.12□□□□□ -1.59
SYNE2-212ENST00000554584 APLP2Q06481 763 aa5.11□□□□□ -1.59
SYNE2-212ENST00000554584 A0A0G2JS52 829 aa5.1□□□□□ -1.59
SYNE2-212ENST00000554584 NCBP3Q53F19 620 aaKnown RBP5.06□□□□□ -1.6
SYNE2-212ENST00000554584 SENP3-EIF4A1A0A087X0R7 540 aa5.05□□□□□ -1.6
SYNE2-212ENST00000554584 TULP1O00294 542 aaPredicted RBP5.04□□□□□ -1.6
SYNE2-212ENST00000554584 AMER1Q5JTC6 1135 aaPredicted RBP5.04□□□□□ -1.6
SYNE2-212ENST00000554584 ZBTB7CA1YPR0 619 aa5□□□□□ -1.61
SYNE2-212ENST00000554584 UBTFP17480 764 aaKnown RBP4.99□□□□□ -1.61
SYNE2-212ENST00000554584 BCANQ96GW7 911 aa4.98□□□□□ -1.61
SYNE2-212ENST00000554584 ZNF326Q5BKZ1 582 aaKnown RBP4.97□□□□□ -1.61
SYNE2-212ENST00000554584 DAXXQ9UER7 740 aaPredicted RBP4.96□□□□□ -1.61
SYNE2-212ENST00000554584 CLSPNQ9HAW4 1339 aa4.94□□□□□ -1.62
SYNE2-212ENST00000554584 FBLN2P98095 1184 aa4.94□□□□□ -1.62
SYNE2-212ENST00000554584 NEFLP07196 543 aa4.94□□□□□ -1.62
SYNE2-212ENST00000554584 CCER1Q8TC90 406 aaPredicted RBP4.93□□□□□ -1.62
SYNE2-212ENST00000554584 SCAF1Q9H7N4 1312 aaKnown RBP4.93□□□□□ -1.62
SYNE2-212ENST00000554584 TAOK2Q9UL54 1235 aa4.9□□□□□ -1.62
SYNE2-212ENST00000554584 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.9□□□□□ -1.63
SYNE2-212ENST00000554584 TPRNQ4KMQ1 711 aa4.89□□□□□ -1.63
SYNE2-212ENST00000554584 ANO8Q9HCE9 1232 aaPredicted RBP4.87□□□□□ -1.63
SYNE2-212ENST00000554584 ZNF316A6NFI3 1004 aaPredicted RBP4.86□□□□□ -1.63
SYNE2-212ENST00000554584 ARXQ96QS3 562 aa4.85□□□□□ -1.63
SYNE2-212ENST00000554584 P3H3Q8IVL6 736 aa4.85□□□□□ -1.63
SYNE2-212ENST00000554584 CENPBP07199 599 aaPredicted RBP4.84□□□□□ -1.63
SYNE2-212ENST00000554584 PABPN1Q86U42 306 aaKnown RBP eCLIP4.84□□□□□ -1.63
SYNE2-212ENST00000554584 CHGAP10645 457 aaKnown RBP4.84□□□□□ -1.63
SYNE2-212ENST00000554584 NPM2Q86SE8 214 aaKnown RBP4.84□□□□□ -1.63
SYNE2-212ENST00000554584 FBXO3Q9UK99 471 aa4.83□□□□□ -1.64
SYNE2-212ENST00000554584 NEUROD1Q13562 356 aa4.83□□□□□ -1.64
SYNE2-212ENST00000554584 SALL2Q9Y467 1007 aaPredicted RBP4.82□□□□□ -1.64
SYNE2-212ENST00000554584 LOC105371045A0A1W2PR82 267 aa4.81□□□□□ -1.64
SYNE2-212ENST00000554584 TRIM41Q8WV44 630 aa4.8□□□□□ -1.64
SYNE2-212ENST00000554584 ZNF777Q9ULD5 760 aaPredicted RBP4.8□□□□□ -1.64
SYNE2-212ENST00000554584 TRIM26Q12899 539 aaPredicted RBP4.8□□□□□ -1.64
SYNE2-212ENST00000554584 TRIM52Q96A61 297 aa4.79□□□□□ -1.64
SYNE2-212ENST00000554584 FAM50AQ14320 339 aaKnown RBP4.79□□□□□ -1.64
SYNE2-212ENST00000554584 PDE4CQ08493 712 aa4.79□□□□□ -1.64
SYNE2-212ENST00000554584 C14orf37Q86TY3 774 aa4.77□□□□□ -1.65
SYNE2-212ENST00000554584 CANXP27824 592 aaKnown RBP4.74□□□□□ -1.65
SYNE2-212ENST00000554584 ZBTB47Q9UFB7 747 aaPredicted RBP4.73□□□□□ -1.65
SYNE2-212ENST00000554584 PRM3Q9NNZ6 103 aa4.72□□□□□ -1.65
SYNE2-212ENST00000554584 EIF5BO60841 1220 aaKnown RBP4.72□□□□□ -1.65
SYNE2-212ENST00000554584 RTL5Q5HYW3 569 aaPredicted RBP4.72□□□□□ -1.65
SYNE2-212ENST00000554584 CLSTN1O94985 981 aa4.72□□□□□ -1.65
SYNE2-212ENST00000554584 LMOD2Q6P5Q4 547 aa4.72□□□□□ -1.65
SYNE2-212ENST00000554584 KAT6BQ8WYB5 2073 aa4.71□□□□□ -1.66
SYNE2-212ENST00000554584 IRX6P78412 446 aaPredicted RBP4.7□□□□□ -1.66
SYNE2-212ENST00000554584 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.7□□□□□ -1.669e-6■■■□□ 18.9
SYNE2-212ENST00000554584 NBR1Q14596 966 aa4.7□□□□□ -1.66
SYNE2-212ENST00000554584 ZEB1P37275 1124 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-212ENST00000554584 HIRIP3Q9BW71 556 aaPredicted RBP4.69□□□□□ -1.66
SYNE2-212ENST00000554584 SOX12O15370 315 aa4.68□□□□□ -1.66
SYNE2-212ENST00000554584 ISY1Q9ULR0 285 aaKnown RBP4.67□□□□□ -1.66
SYNE2-212ENST00000554584 WWC1Q8IX03 1113 aa4.67□□□□□ -1.66
SYNE2-212ENST00000554584 TRHP20396 242 aaPredicted RBP4.65□□□□□ -1.66
SYNE2-212ENST00000554584 MLECQ14165 292 aa4.65□□□□□ -1.67
SYNE2-212ENST00000554584 ABCC9O60706 1549 aa4.65□□□□□ -1.67
SYNE2-212ENST00000554584 STAG3Q9UJ98 1225 aa4.65□□□□□ -1.67
SYNE2-212ENST00000554584 KLHL34Q8N239 644 aa4.64□□□□□ -1.67
SYNE2-212ENST00000554584 HAP1P54257 671 aaPredicted RBP4.63□□□□□ -1.67
SYNE2-212ENST00000554584 CDK11BP21127 795 aaKnown RBP4.63□□□□□ -1.67
SYNE2-212ENST00000554584 CDK11AQ9UQ88 783 aaPredicted RBP4.63□□□□□ -1.67
SYNE2-212ENST00000554584 HRCP23327 699 aa4.63□□□□□ -1.67
SYNE2-212ENST00000554584 ERICH6BQ5W0A0 696 aa4.62□□□□□ -1.67
SYNE2-212ENST00000554584 ESF1Q9H501 851 aaKnown RBP4.61□□□□□ -1.67
SYNE2-212ENST00000554584 CHIC2Q9UKJ5 165 aa4.61□□□□□ -1.67
SYNE2-212ENST00000554584 ARID4BQ4LE39 1312 aaPredicted RBP4.6□□□□□ -1.67
SYNE2-212ENST00000554584 ARID3AQ99856 593 aa4.6□□□□□ -1.67
SYNE2-212ENST00000554584 KDM2AQ9Y2K7 1162 aa4.6□□□□□ -1.67
SYNE2-212ENST00000554584 NPHP1O15259 732 aa4.59□□□□□ -1.67
SYNE2-212ENST00000554584 KCNH8Q96L42 1107 aa4.59□□□□□ -1.67
SYNE2-212ENST00000554584 ZNF428Q96B54 188 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 242.6 ms