Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MTCYBP35-201ENST00000503630 1137 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 CBX3P3-201ENST00000508108 532 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 AL359273.1-201ENST00000510918 627 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 RNA5SP217-201ENST00000515959 91 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 AP003497.1-201ENST00000528472 562 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 AP004247.1-201ENST00000531556 1289 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 AC008751.2-201ENST00000597885 980 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 BNIP3P23-201ENST00000599655 511 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 AC091304.6-201ENST00000619761 202 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 AC009812.4-201ENST00000569134 1805 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 AC002546.1-201ENST00000588041 2504 ntBASIC5.5□□□□□ -1.53
SHROOM4Q9ULL8 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 RNU6-853P-201ENST00000364306 107 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AL591034.1-201ENST00000407447 340 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 RAP1BP1-201ENST00000412709 553 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 RPS7P13-201ENST00000413955 498 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 RAC1P3-201ENST00000416129 580 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 ARL5AP4-201ENST00000430731 512 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 Y_RNA.676-201ENST00000516393 96 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AC055876.1-202ENST00000567053 138 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 NIFKP6-201ENST00000598115 845 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AC079089.3-201ENST00000603094 673 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AC018638.7-201ENST00000605836 1114 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AC103710.3-201ENST00000608157 948 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AC131159.1-201ENST00000621854 213 ntBASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC5.49□□□□□ -1.53
SHROOM4Q9ULL8 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 MIR423-201ENST00000362201 94 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 RNU6-637P-201ENST00000384050 107 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 U3.20-201ENST00000390909 217 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 HMGB1P11-201ENST00000413899 637 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 OR4K11P-201ENST00000431829 904 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 RPL35AP22-201ENST00000436855 335 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 MTND5P2-201ENST00000442927 1142 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 NIPA2P5-201ENST00000452282 464 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 AC104308.1-201ENST00000454621 333 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 AC108860.1-201ENST00000484521 383 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 AC111000.2-201ENST00000507775 550 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 MIR3921-201ENST00000577308 85 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 AL592295.2-201ENST00000612578 206 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 AC079416.3-201ENST00000624479 549 ntBASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHROOM4Q9ULL8 RNU6-433P-201ENST00000363216 104 ntBASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 Y_RNA.548-201ENST00000384656 105 ntBASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 RNU6-114P-201ENST00000384704 105 ntBASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 U3.42-201ENST00000408746 214 ntBASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 YPEL5P1-201ENST00000419731 367 ntBASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 AP002791.1-201ENST00000623291 381 ntBASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 AL159972.1-201ENST00000625150 448 ntBASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SHROOM4Q9ULL8 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 DNAJA1P2-201ENST00000421360 1197 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AL593851.1-201ENST00000426171 157 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 SNRPEP4-201ENST00000435815 279 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AP000542.1-201ENST00000448473 371 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 LTV1P1-201ENST00000510683 1237 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AC125611.2-201ENST00000551907 647 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AL158827.2-201ENST00000602494 330 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AL357094.1-201ENST00000603845 844 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AC112187.2-201ENST00000604345 283 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AC018714.1-201ENST00000605028 208 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AL691447.3-201ENST00000635020 330 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 AC099063.3-201ENST00000642066 185 ntBASIC5.46□□□□□ -1.53
SHROOM4Q9ULL8 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
SHROOM4Q9ULL8 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms