RNA–Protein interactions for RNA: ENST00000556479.5

LINC00640-203, long intergenic non-protein coding RNA 640, humanhuman

TSL 2 BASIC

Gene LINC00640, Length 576 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00640-203ENST00000556479 AEBP2Q6ZN18 517 aaPredicted RBP20.62■□□□□ 0.89
LINC00640-203ENST00000556479 CHIC1Q5VXU3 224 aa20.21■□□□□ 0.83
LINC00640-203ENST00000556479 PHF23Q9BUL5 403 aaPredicted RBP17.82■□□□□ 0.44
LINC00640-203ENST00000556479 SENP3Q9H4L4 574 aaPredicted RBP17.42■□□□□ 0.38
LINC00640-203ENST00000556479 PLPPR3Q6T4P5 718 aa16.42■□□□□ 0.22
LINC00640-203ENST00000556479 FOXD1Q16676 465 aa16.18■□□□□ 0.18
LINC00640-203ENST00000556479 PPP6R1Q9UPN7 881 aa15.69■□□□□ 0.1
LINC00640-203ENST00000556479 ADRA2BP18089 450 aa15.65■□□□□ 0.1
LINC00640-203ENST00000556479 PIAS4Q8N2W9 510 aaPredicted RBP15.24■□□□□ 0.03
LINC00640-203ENST00000556479 MSH5O43196 834 aa14.85□□□□□ -0.03
LINC00640-203ENST00000556479 PPP4R3CPQ6ZMV5 832 aa14.49□□□□□ -0.09
LINC00640-203ENST00000556479 KCNA4P22459 653 aa14.27□□□□□ -0.13
LINC00640-203ENST00000556479 SCAF1Q9H7N4 1312 aaKnown RBP14.26□□□□□ -0.13
LINC00640-203ENST00000556479 MAPK8IP2Q13387 824 aaPredicted RBP14.18□□□□□ -0.14
LINC00640-203ENST00000556479 NCBP3Q53F19 620 aaKnown RBP14.11□□□□□ -0.15
LINC00640-203ENST00000556479 CNKSR2Q8WXI2 1034 aa14.06□□□□□ -0.16
LINC00640-203ENST00000556479 DMRT2Q9Y5R5 561 aa13.95□□□□□ -0.18
LINC00640-203ENST00000556479 NPM3O75607 178 aaKnown RBP13.94□□□□□ -0.18
LINC00640-203ENST00000556479 RNF216Q9NWF9 866 aaPredicted RBP13.77□□□□□ -0.21
LINC00640-203ENST00000556479 HOXD11P31277 338 aaPredicted RBP13.71□□□□□ -0.21
LINC00640-203ENST00000556479 SLC4A1APQ9BWU0 796 aaKnown RBP13.58□□□□□ -0.24
LINC00640-203ENST00000556479 DNAJC5BQ9UF47 199 aa13.58□□□□□ -0.24
LINC00640-203ENST00000556479 POTEDQ86YR6 584 aa13.38□□□□□ -0.27
LINC00640-203ENST00000556479 EHMT2Q96KQ7 1210 aa13.28□□□□□ -0.28
LINC00640-203ENST00000556479 DCAF8L1A6NGE4 600 aa13.25□□□□□ -0.29
LINC00640-203ENST00000556479 SLC4A2P04920 1241 aa13.17□□□□□ -0.3
LINC00640-203ENST00000556479 CSRNP3Q8WYN3 585 aa13.17□□□□□ -0.3
LINC00640-203ENST00000556479 ZBTB22O15209 634 aa13.16□□□□□ -0.3
LINC00640-203ENST00000556479 FOXD4L1Q9NU39 408 aa13.09□□□□□ -0.31
LINC00640-203ENST00000556479 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.01□□□□□ -0.33
LINC00640-203ENST00000556479 U3KPZ7 1027 aaPredicted RBP12.86□□□□□ -0.35
LINC00640-203ENST00000556479 MYCNP04198 464 aaPredicted RBP12.85□□□□□ -0.35
LINC00640-203ENST00000556479 RNF39Q9H2S5 420 aa12.77□□□□□ -0.37
LINC00640-203ENST00000556479 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.67□□□□□ -0.38
LINC00640-203ENST00000556479 HNRNPUL2Q1KMD3 747 aaKnown RBP12.67□□□□□ -0.38
LINC00640-203ENST00000556479 ATXN8OSP0DMR3 200 aa12.65□□□□□ -0.38
LINC00640-203ENST00000556479 SAMD1Q6SPF0 538 aaPredicted RBP12.65□□□□□ -0.38
LINC00640-203ENST00000556479 C1QBPQ07021 282 aaKnown RBP12.61□□□□□ -0.39
LINC00640-203ENST00000556479 ATF5Q9Y2D1 282 aaPredicted RBP12.54□□□□□ -0.4
LINC00640-203ENST00000556479 APLP2Q06481 763 aa12.49□□□□□ -0.41
LINC00640-203ENST00000556479 SPINK5Q9NQ38 1064 aaPredicted RBP12.46□□□□□ -0.41
LINC00640-203ENST00000556479 CAPN15O75808 1086 aa12.36□□□□□ -0.43
LINC00640-203ENST00000556479 ZNF219Q9P2Y4 722 aaPredicted RBP12.33□□□□□ -0.44
LINC00640-203ENST00000556479 TRHP20396 242 aaPredicted RBP12.32□□□□□ -0.44
LINC00640-203ENST00000556479 CACNB1Q02641 598 aaPredicted RBP12.32□□□□□ -0.44
LINC00640-203ENST00000556479 DSG3P32926 999 aa12.19□□□□□ -0.46
LINC00640-203ENST00000556479 POLA2Q14181 598 aa12.17□□□□□ -0.46
LINC00640-203ENST00000556479 ABCB7O75027 752 aa12.13□□□□□ -0.47
LINC00640-203ENST00000556479 MKRN4PQ13434 485 aaPredicted RBP12.01□□□□□ -0.49
LINC00640-203ENST00000556479 ZBTB12Q9Y330 459 aaPredicted RBP11.95□□□□□ -0.5
LINC00640-203ENST00000556479 FBLN2P98095 1184 aa11.94□□□□□ -0.5
LINC00640-203ENST00000556479 FKBP8Q14318 412 aa11.84□□□□□ -0.51
LINC00640-203ENST00000556479 SPDYE4A6NLX3 237 aa11.74□□□□□ -0.53
LINC00640-203ENST00000556479 OSCARQ8IYS5 282 aa11.74□□□□□ -0.53
LINC00640-203ENST00000556479 SPDYE2BA6NHP3 402 aa11.67□□□□□ -0.54
LINC00640-203ENST00000556479 SPDYE6P0CI01 402 aa11.67□□□□□ -0.54
LINC00640-203ENST00000556479 SPDYE2Q495Y8 402 aa11.67□□□□□ -0.54
LINC00640-203ENST00000556479 PROM2Q8N271 834 aa11.62□□□□□ -0.55
LINC00640-203ENST00000556479 ZNF692Q9BU19 519 aaPredicted RBP11.62□□□□□ -0.55
LINC00640-203ENST00000556479 SSUH2Q9Y2M2 353 aa11.61□□□□□ -0.55
LINC00640-203ENST00000556479 RBM42Q9BTD8 480 aaKnown RBP11.55□□□□□ -0.56
LINC00640-203ENST00000556479 PABPN1Q86U42 306 aaKnown RBP eCLIP11.48□□□□□ -0.57
LINC00640-203ENST00000556479 AKT1S1Q96B36 256 aa11.47□□□□□ -0.57
LINC00640-203ENST00000556479 FBXO3Q9UK99 471 aa11.38□□□□□ -0.59
LINC00640-203ENST00000556479 REM2Q8IYK8 340 aaPredicted RBP11.37□□□□□ -0.59
LINC00640-203ENST00000556479 STAG3Q9UJ98 1225 aa11.3□□□□□ -0.6
LINC00640-203ENST00000556479 SPDYE1Q8NFV5 336 aaPredicted RBP11.29□□□□□ -0.6
LINC00640-203ENST00000556479 VASPP50552 380 aaPredicted RBP11.25□□□□□ -0.61
LINC00640-203ENST00000556479 PITPNM1O00562 1244 aa11.22□□□□□ -0.61
LINC00640-203ENST00000556479 CLEC11AQ9Y240 323 aa11.2□□□□□ -0.62
LINC00640-203ENST00000556479 PRR29P0C7W0 189 aa11.13□□□□□ -0.63
LINC00640-203ENST00000556479 IFNLR1Q8IU57 520 aaPredicted RBP11.13□□□□□ -0.63
LINC00640-203ENST00000556479 MIER1Q8N108 512 aa11.11□□□□□ -0.63
LINC00640-203ENST00000556479 PLCD3Q8N3E9 789 aa11.08□□□□□ -0.64
LINC00640-203ENST00000556479 CHRDL2Q6WN34 429 aa11.06□□□□□ -0.64
LINC00640-203ENST00000556479 CREBZFQ9NS37 354 aa11.06□□□□□ -0.64
LINC00640-203ENST00000556479 FXR2P51116 673 aaKnown RBP eCLIP11.02□□□□□ -0.65
LINC00640-203ENST00000556479 PLEKHG5O94827 1062 aa10.99□□□□□ -0.65
LINC00640-203ENST00000556479 MNX1P50219 401 aaPredicted RBP10.99□□□□□ -0.65
LINC00640-203ENST00000556479 KLHL34Q8N239 644 aa10.99□□□□□ -0.65
LINC00640-203ENST00000556479 CHADLQ6NUI6 762 aa10.96□□□□□ -0.65
LINC00640-203ENST00000556479 PIP4P2Q8N4L2 257 aa10.96□□□□□ -0.65
LINC00640-203ENST00000556479 AMER1Q5JTC6 1135 aaPredicted RBP10.95□□□□□ -0.66
LINC00640-203ENST00000556479 SPOCK2Q92563 424 aa10.95□□□□□ -0.66
LINC00640-203ENST00000556479 RTN4Q9NQC3 1192 aaKnown RBP10.95□□□□□ -0.66
LINC00640-203ENST00000556479 ZBTB47Q9UFB7 747 aaPredicted RBP10.95□□□□□ -0.66
LINC00640-203ENST00000556479 PRKAR2AP13861 404 aaKnown RBP10.93□□□□□ -0.66
LINC00640-203ENST00000556479 FARP1Q9Y4F1 1045 aaPredicted RBP10.88□□□□□ -0.67
LINC00640-203ENST00000556479 NUBP1P53384 320 aa10.87□□□□□ -0.67
LINC00640-203ENST00000556479 NPM1P06748 294 aaKnown RBP eCLIP10.83□□□□□ -0.68
LINC00640-203ENST00000556479 PKD2Q13563 968 aa10.81□□□□□ -0.68
LINC00640-203ENST00000556479 RASEFQ8IZ41 740 aa10.78□□□□□ -0.68
LINC00640-203ENST00000556479 GSE1Q14687 1217 aa10.73□□□□□ -0.69
LINC00640-203ENST00000556479 CIZ1Q9ULV3 898 aaPredicted RBP10.73□□□□□ -0.69
LINC00640-203ENST00000556479 DCAF8Q5TAQ9 597 aa10.72□□□□□ -0.69
LINC00640-203ENST00000556479 FAM212AQ96EL1 285 aa10.71□□□□□ -0.69
LINC00640-203ENST00000556479 TSPYL2Q9H2G4 693 aaPredicted RBP10.66□□□□□ -0.7
LINC00640-203ENST00000556479 ECM2O94769 699 aaPredicted RBP10.65□□□□□ -0.7
LINC00640-203ENST00000556479 TRIM41Q8WV44 630 aa10.65□□□□□ -0.7
LINC00640-203ENST00000556479 C19orf67A6NJJ6 358 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms