Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 U4.7-201ENST00000638126 106 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.95□□□□□ -1.46
COL9A1P20849 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC5.95□□□□□ -1.46
COL9A1P20849 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC5.95□□□□□ -1.46
COL9A1P20849 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.95□□□□□ -1.46
COL9A1P20849 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.95□□□□□ -1.46
COL9A1P20849 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 AC232271.1-201ENST00000602455 2715 ntBASIC5.95□□□□□ -1.46
COL9A1P20849 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
COL9A1P20849 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.95□□□□□ -1.46
COL9A1P20849 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC5.95□□□□□ -1.46
COL9A1P20849 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.95□□□□□ -1.46
COL9A1P20849 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL9A1P20849 AL353743.1-202ENST00000431724 1695 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
COL9A1P20849 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
COL9A1P20849 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC5.94□□□□□ -1.46
COL9A1P20849 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL9A1P20849 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.94□□□□□ -1.46
COL9A1P20849 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
COL9A1P20849 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC5.94□□□□□ -1.46
COL9A1P20849 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC5.94□□□□□ -1.46
COL9A1P20849 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.94□□□□□ -1.46
COL9A1P20849 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 RNU6-1286P-201ENST00000383871 107 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 Y_RNA.542-201ENST00000384641 111 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 SNORA20-201ENST00000384662 132 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 RNU6-541P-201ENST00000384709 110 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 RNU6-882P-201ENST00000391025 103 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
COL9A1P20849 CYCSP10-201ENST00000417973 294 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 AC113412.1-201ENST00000425840 504 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.94□□□□□ -1.46
COL9A1P20849 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC5.94□□□□□ -1.46
COL9A1P20849 RN7SL352P-201ENST00000466002 277 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 RPL23AP49-201ENST00000492925 468 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 AC010265.1-201ENST00000513509 211 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 RN7SKP179-201ENST00000516126 217 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.94□□□□□ -1.46
COL9A1P20849 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.94□□□□□ -1.46
COL9A1P20849 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.94□□□□□ -1.46
COL9A1P20849 AC009127.3-201ENST00000570531 403 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 AL161798.1-201ENST00000604630 131 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 AL596275.2-206ENST00000641957 626 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
COL9A1P20849 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 AL672167.1-205ENST00000641112 3080 ntBASIC5.94□□□□□ -1.46
COL9A1P20849 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
COL9A1P20849 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
COL9A1P20849 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL9A1P20849 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL9A1P20849 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL9A1P20849 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL9A1P20849 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL9A1P20849 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL9A1P20849 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL9A1P20849 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL9A1P20849 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL9A1P20849 RNU6-1272P-201ENST00000362776 107 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 RNU6-263P-201ENST00000363811 107 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 RNA5SP505-201ENST00000364748 108 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 SNORA70.4-201ENST00000365509 134 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 RNA5SP211-201ENST00000365516 117 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 Y_RNA.420-201ENST00000384043 110 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 RNA5SP87-201ENST00000384155 118 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 RNU6-429P-201ENST00000384582 108 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 EIF1AXP1-201ENST00000419267 435 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 AC008065.1-201ENST00000428525 348 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC5.93□□□□□ -1.46
COL9A1P20849 RPS20P10-201ENST00000451209 253 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 AC004129.2-201ENST00000457229 287 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.93□□□□□ -1.46
COL9A1P20849 Y_RNA.709-201ENST00000516952 92 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 RNA5SP165-201ENST00000517142 115 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 AC073581.1-201ENST00000519036 575 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 AL391261.3-201ENST00000557194 520 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 MIR4782-201ENST00000577987 79 ntBASIC5.93□□□□□ -1.46
COL9A1P20849 MIR4429-201ENST00000580105 73 ntBASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms