Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 SNORD42.2-201ENST00000365570 69 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 RNU6-474P-201ENST00000384243 107 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 RNU4-26P-201ENST00000410270 107 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AL035423.1-201ENST00000420331 213 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC092832.1-201ENST00000422934 400 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AL591419.1-201ENST00000427423 339 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 FGF7P3-201ENST00000454645 303 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 snoU13.8-201ENST00000458890 104 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AL133162.1-201ENST00000463228 453 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC087879.1-201ENST00000474343 374 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC006499.6-201ENST00000511169 607 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC021146.1-201ENST00000511202 716 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 TTC39CP1-201ENST00000512513 755 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 RNU4-29P-201ENST00000515943 174 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 IGKV2D-19-201ENST00000523346 262 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 RPL21P12-201ENST00000559810 515 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 MIR4504-201ENST00000577413 92 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC060771.1-201ENST00000582031 164 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AP001029.3-201ENST00000588063 596 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC103710.3-201ENST00000608157 948 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 uc_338.12-201ENST00000616344 181 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC015908.5-201ENST00000623289 343 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 AC011460.1-201ENST00000636268 1834 ntBASIC5.16□□□□□ -1.58
USHBP1Q8N6Y0 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.58
USHBP1Q8N6Y0 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
USHBP1Q8N6Y0 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
USHBP1Q8N6Y0 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC5.15□□□□□ -1.58
USHBP1Q8N6Y0 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
USHBP1Q8N6Y0 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.15□□□□□ -1.58
USHBP1Q8N6Y0 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
USHBP1Q8N6Y0 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.15□□□□□ -1.58
USHBP1Q8N6Y0 RNU6-97P-201ENST00000363387 104 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-831P-201ENST00000384548 107 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 U3.20-201ENST00000390909 217 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-193P-201ENST00000410977 107 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 AC009302.1-201ENST00000417147 390 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 BEND7P1-201ENST00000422058 457 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 GPM6BP2-201ENST00000432046 144 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 RPL23AP83-201ENST00000434984 473 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 GPM6BP1-201ENST00000446387 144 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 PLGLA-201ENST00000465668 449 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 AC104057.1-201ENST00000515547 497 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 ELOCP31-201ENST00000540463 467 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 GLUD1P4-201ENST00000590914 418 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 SNRPGP17-201ENST00000603780 214 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 AC084757.4-201ENST00000616350 526 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 AC091953.5-201ENST00000622919 233 ntBASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.15□□□□□ -1.59
USHBP1Q8N6Y0 NEAT1-202ENST00000501122 22743 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-254P-201ENST00000363377 107 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 SOD2P1-201ENST00000396543 562 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 RNU2-62P-201ENST00000410868 191 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 HSPE1P1-201ENST00000421494 318 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 PDSS1P1-201ENST00000422953 1114 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 TIMM9P1-201ENST00000436122 256 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AC083863.1-201ENST00000438811 231 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 RPL7P52-201ENST00000449200 742 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 Y_RNA.639-201ENST00000458981 102 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 Y_RNA.631-201ENST00000459607 101 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AP001992.1-205ENST00000462248 379 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 AC027575.1-201ENST00000481064 460 ntBASIC5.14□□□□□ -1.59
USHBP1Q8N6Y0 RN7SL809P-201ENST00000482040 297 ntBASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms