Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 AC120498.9-201ENST00000339021 3867 ntBASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 HLA-A-209ENST00000638375 975 ntBASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HIF3AQ9Y2N7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 AL160286.2-201ENST00000567150 934 ntBASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HIF3AQ9Y2N7 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 TSPY21P-201ENST00000433481 731 ntBASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 KRT18P6-201ENST00000555540 1265 ntBASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.23■□□□□ 0.35
HIF3AQ9Y2N7 AC233263.1-201ENST00000578059 224 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms