Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FOXA2Q9Y261 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC15.46■□□□□ 0.07
FOXA2Q9Y261 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15.46■□□□□ 0.07
FOXA2Q9Y261 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
FOXA2Q9Y261 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
FOXA2Q9Y261 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC15.46■□□□□ 0.06
FOXA2Q9Y261 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
FOXA2Q9Y261 FP475955.4-201ENST00000623131 1990 ntBASIC15.45■□□□□ 0.06
FOXA2Q9Y261 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 AC093525.10-201ENST00000625130 1569 ntBASIC15.45■□□□□ 0.06
FOXA2Q9Y261 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 RN7SL471P-201ENST00000580476 299 ntBASIC15.45■□□□□ 0.06
FOXA2Q9Y261 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 MMD2-204ENST00000612910 778 ntTSL 5 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
FOXA2Q9Y261 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 IRX1P1-201ENST00000438849 1838 ntBASIC15.44■□□□□ 0.06
FOXA2Q9Y261 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.44■□□□□ 0.06
FOXA2Q9Y261 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 KRASP1-201ENST00000407852 552 ntBASIC15.43■□□□□ 0.06
FOXA2Q9Y261 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 KRT18P16-201ENST00000510337 1294 ntBASIC15.43■□□□□ 0.06
FOXA2Q9Y261 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 AL023875.1-201ENST00000640777 796 ntBASIC15.43■□□□□ 0.06
FOXA2Q9Y261 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 AL031598.1-201ENST00000561511 1773 ntBASIC15.43■□□□□ 0.06
FOXA2Q9Y261 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXA2Q9Y261 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms