Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CNTN3Q9P232 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
CNTN3Q9P232 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.58■□□□□ 0.88
CNTN3Q9P232 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CNTN3Q9P232 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.57■□□□□ 0.88
CNTN3Q9P232 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CNTN3Q9P232 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CNTN3Q9P232 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CNTN3Q9P232 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.57■□□□□ 0.88
CNTN3Q9P232 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CNTN3Q9P232 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CNTN3Q9P232 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CNTN3Q9P232 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
CNTN3Q9P232 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CNTN3Q9P232 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.57■□□□□ 0.88
CNTN3Q9P232 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.57■□□□□ 0.88
CNTN3Q9P232 ATP5G1P1-201ENST00000448724 379 ntBASIC20.57■□□□□ 0.88
CNTN3Q9P232 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CNTN3Q9P232 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CNTN3Q9P232 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.57■□□□□ 0.88
CNTN3Q9P232 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CNTN3Q9P232 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CNTN3Q9P232 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.56■□□□□ 0.88
CNTN3Q9P232 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CNTN3Q9P232 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.56■□□□□ 0.88
CNTN3Q9P232 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.56■□□□□ 0.88
CNTN3Q9P232 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.56■□□□□ 0.88
CNTN3Q9P232 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.56■□□□□ 0.88
CNTN3Q9P232 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.56■□□□□ 0.88
CNTN3Q9P232 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.56■□□□□ 0.88
CNTN3Q9P232 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.56■□□□□ 0.88
CNTN3Q9P232 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CNTN3Q9P232 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 AC006011.2-201ENST00000621313 1158 ntBASIC20.55■□□□□ 0.88
CNTN3Q9P232 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.55■□□□□ 0.88
CNTN3Q9P232 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CNTN3Q9P232 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CNTN3Q9P232 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CNTN3Q9P232 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CNTN3Q9P232 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CNTN3Q9P232 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CNTN3Q9P232 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CNTN3Q9P232 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CNTN3Q9P232 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CNTN3Q9P232 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CNTN3Q9P232 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CNTN3Q9P232 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.54■□□□□ 0.88
CNTN3Q9P232 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CNTN3Q9P232 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.53■□□□□ 0.88
CNTN3Q9P232 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CNTN3Q9P232 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CNTN3Q9P232 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms