Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 HLA-A-209ENST00000638375 975 ntBASIC17.07■□□□□ 0.32
VSX1Q9NZR4 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VSX1Q9NZR4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 AL160286.2-201ENST00000567150 934 ntBASIC17.06■□□□□ 0.32
VSX1Q9NZR4 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VSX1Q9NZR4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 KRT18P6-201ENST00000555540 1265 ntBASIC17.05■□□□□ 0.32
VSX1Q9NZR4 AC233263.1-201ENST00000578059 224 ntBASIC17.05■□□□□ 0.32
VSX1Q9NZR4 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.05■□□□□ 0.32
VSX1Q9NZR4 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 TSPY21P-201ENST00000433481 731 ntBASIC17.04■□□□□ 0.32
VSX1Q9NZR4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.04■□□□□ 0.32
VSX1Q9NZR4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms