Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VTA1Q9NP79 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
VTA1Q9NP79 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
VTA1Q9NP79 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
VTA1Q9NP79 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
VTA1Q9NP79 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.01
VTA1Q9NP79 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
VTA1Q9NP79 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.39■■□□□ 1.01
VTA1Q9NP79 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
VTA1Q9NP79 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VTA1Q9NP79 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VTA1Q9NP79 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VTA1Q9NP79 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VTA1Q9NP79 HCG4P8-203ENST00000443049 980 ntBASIC21.38■■□□□ 1.01
VTA1Q9NP79 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 RASA4DP-201ENST00000460726 1199 ntBASIC21.38■■□□□ 1.01
VTA1Q9NP79 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VTA1Q9NP79 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VTA1Q9NP79 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VTA1Q9NP79 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.38■■□□□ 1.01
VTA1Q9NP79 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VTA1Q9NP79 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VTA1Q9NP79 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VTA1Q9NP79 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 HBZP1-201ENST00000354915 429 ntBASIC21.37■■□□□ 1.01
VTA1Q9NP79 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VTA1Q9NP79 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
VTA1Q9NP79 SPDYE13P-201ENST00000445314 798 ntBASIC21.37■■□□□ 1.01
VTA1Q9NP79 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VTA1Q9NP79 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VTA1Q9NP79 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
VTA1Q9NP79 KRT8P3-201ENST00000519669 1449 ntBASIC21.37■■□□□ 1.01
VTA1Q9NP79 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VTA1Q9NP79 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VTA1Q9NP79 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VTA1Q9NP79 AC036111.1-201ENST00000533973 1582 ntBASIC21.36■■□□□ 1.01
VTA1Q9NP79 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VTA1Q9NP79 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VTA1Q9NP79 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VTA1Q9NP79 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VTA1Q9NP79 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 MIR3180-5-201ENST00000583743 153 ntBASIC21.36■■□□□ 1.01
VTA1Q9NP79 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VTA1Q9NP79 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.36■■□□□ 1.01
VTA1Q9NP79 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.35■■□□□ 1.01
VTA1Q9NP79 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.35■■□□□ 1.01
VTA1Q9NP79 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.35■■□□□ 1.01
VTA1Q9NP79 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.35■■□□□ 1.01
VTA1Q9NP79 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.35■■□□□ 1.01
VTA1Q9NP79 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC21.35■■□□□ 1.01
VTA1Q9NP79 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VTA1Q9NP79 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
VTA1Q9NP79 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.35■■□□□ 1.01
VTA1Q9NP79 MCCD1P1-208ENST00000445732 328 ntBASIC21.35■■□□□ 1.01
VTA1Q9NP79 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms