Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 KRT18P16-201ENST00000510337 1294 ntBASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
TRIM56Q9BRZ2 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 UNC93B4-201ENST00000505679 747 ntBASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 AC008403.3-201ENST00000598924 454 ntBASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.46■□□□□ 0.71
TRIM56Q9BRZ2 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 AL121829.2-201ENST00000620908 328 ntBASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM56Q9BRZ2 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 KRT18P6-201ENST00000555540 1265 ntBASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 AC233263.1-201ENST00000578059 224 ntBASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms