Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC42Q96M95 AC083906.2-201ENST00000511578 360 ntBASIC20.62■□□□□ 0.89
CCDC42Q96M95 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.62■□□□□ 0.89
CCDC42Q96M95 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC42Q96M95 AC005082.1-201ENST00000413042 2259 ntBASIC20.62■□□□□ 0.89
CCDC42Q96M95 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC42Q96M95 AC135050.7-201ENST00000624508 2218 ntBASIC20.62■□□□□ 0.89
CCDC42Q96M95 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC42Q96M95 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
CCDC42Q96M95 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC42Q96M95 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 AC092368.3-202ENST00000574180 1591 ntBASIC20.61■□□□□ 0.89
CCDC42Q96M95 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 AL121832.2-201ENST00000610979 668 ntBASIC20.61■□□□□ 0.89
CCDC42Q96M95 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC42Q96M95 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC42Q96M95 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC42Q96M95 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC42Q96M95 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 AL390961.4-201ENST00000623958 2535 ntBASIC20.6■□□□□ 0.89
CCDC42Q96M95 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC42Q96M95 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC42Q96M95 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC42Q96M95 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 TUBB8P6-201ENST00000436895 1288 ntBASIC20.6■□□□□ 0.89
CCDC42Q96M95 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.6■□□□□ 0.89
CCDC42Q96M95 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 KRT18P16-201ENST00000510337 1294 ntBASIC20.6■□□□□ 0.89
CCDC42Q96M95 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC42Q96M95 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC42Q96M95 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCDC42Q96M95 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC42Q96M95 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CCDC42Q96M95 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC42Q96M95 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC42Q96M95 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC42Q96M95 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC42Q96M95 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC42Q96M95 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
CCDC42Q96M95 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms