Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 AC010331.1-201ENST00000611423 582 ntBASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 AC010947.1-201ENST00000623454 693 ntBASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CLIP3Q96DZ5 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 TMPOP1-202ENST00000424642 1267 ntBASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 AC130371.2-201ENST00000619443 611 ntBASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.4■□□□□ 0.54
CLIP3Q96DZ5 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLIP3Q96DZ5 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
CLIP3Q96DZ5 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CLIP3Q96DZ5 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 AC009237.14-201ENST00000609975 1594 ntBASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 FAM207BP-201ENST00000447172 505 ntBASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 RN7SL850P-201ENST00000579959 291 ntBASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 AP005242.2-201ENST00000580065 1175 ntBASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 TCF3P1-201ENST00000423021 1937 ntBASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CLIP3Q96DZ5 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 AL160286.2-201ENST00000567150 934 ntBASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.38■□□□□ 0.53
CLIP3Q96DZ5 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms