Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AC009947.2-201ENST00000444014 672 ntBASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AC010203.1-204ENST00000548782 407 ntBASIC5.89□□□□□ -1.47
SYNE1Q8NF91 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 HYMAI.1-201ENST00000620949 238 ntBASIC5.89□□□□□ -1.47
SYNE1Q8NF91 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SYNE1Q8NF91 PXK-206ENST00000463280 2825 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 AL359075.1-203ENST00000462729 1002 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 DGCR10-201ENST00000609839 495 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 AK4P3-201ENST00000418260 669 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 KSR1P1-201ENST00000446298 240 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 ECEL1P2-202ENST00000465689 757 ntBASIC5.88□□□□□ -1.47
SYNE1Q8NF91 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SYNE1Q8NF91 NMU-205ENST00000511469 756 ntTSL 3 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms