Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
USP38Q8NB14 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
USP38Q8NB14 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP38Q8NB14 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
USP38Q8NB14 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.34■■□□□ 1.01
USP38Q8NB14 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.34■■□□□ 1.01
USP38Q8NB14 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.34■■□□□ 1.01
USP38Q8NB14 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
USP38Q8NB14 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
USP38Q8NB14 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.34■■□□□ 1.01
USP38Q8NB14 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.34■■□□□ 1.01
USP38Q8NB14 AL691432.3-201ENST00000621860 400 ntBASIC21.34■■□□□ 1.01
USP38Q8NB14 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
USP38Q8NB14 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
USP38Q8NB14 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.34■■□□□ 1.01
USP38Q8NB14 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP38Q8NB14 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
USP38Q8NB14 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.34■■□□□ 1.01
USP38Q8NB14 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.33■■□□□ 1.01
USP38Q8NB14 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.33■■□□□ 1.01
USP38Q8NB14 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
USP38Q8NB14 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 SLC25A1P2-201ENST00000430693 912 ntBASIC21.33■■□□□ 1.01
USP38Q8NB14 CCR12P-201ENST00000446203 998 ntBASIC21.33■■□□□ 1.01
USP38Q8NB14 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.33■■□□□ 1.01
USP38Q8NB14 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.33■■□□□ 1.01
USP38Q8NB14 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 AC116562.4-202ENST00000641738 218 ntBASIC21.33■■□□□ 1.01
USP38Q8NB14 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
USP38Q8NB14 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1
USP38Q8NB14 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.33■■□□□ 1
USP38Q8NB14 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
USP38Q8NB14 IER3-202ENST00000376377 1350 ntBASIC21.33■■□□□ 1
USP38Q8NB14 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.33■■□□□ 1
USP38Q8NB14 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.33■■□□□ 1
USP38Q8NB14 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
USP38Q8NB14 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
USP38Q8NB14 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
USP38Q8NB14 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
USP38Q8NB14 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
USP38Q8NB14 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.32■■□□□ 1
USP38Q8NB14 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP38Q8NB14 RNF152P1-201ENST00000397754 604 ntBASIC21.32■■□□□ 1
USP38Q8NB14 HMGA1P5-201ENST00000412453 271 ntBASIC21.32■■□□□ 1
USP38Q8NB14 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP38Q8NB14 MFAP1P1-201ENST00000442257 1255 ntBASIC21.32■■□□□ 1
USP38Q8NB14 AC008040.2-201ENST00000461049 708 ntBASIC21.32■■□□□ 1
USP38Q8NB14 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.32■■□□□ 1
USP38Q8NB14 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.32■■□□□ 1
USP38Q8NB14 AL158211.5-201ENST00000623583 2518 ntBASIC21.32■■□□□ 1
USP38Q8NB14 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
USP38Q8NB14 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.32■■□□□ 1
USP38Q8NB14 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
USP38Q8NB14 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
USP38Q8NB14 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
USP38Q8NB14 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.31■■□□□ 1
USP38Q8NB14 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
USP38Q8NB14 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
USP38Q8NB14 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.31■■□□□ 1
USP38Q8NB14 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.31■■□□□ 1
USP38Q8NB14 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.31■■□□□ 1
USP38Q8NB14 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.31■■□□□ 1
USP38Q8NB14 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
USP38Q8NB14 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.31■■□□□ 1
USP38Q8NB14 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.31■■□□□ 1
USP38Q8NB14 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.31■■□□□ 1
USP38Q8NB14 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.31■■□□□ 1
USP38Q8NB14 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.31■■□□□ 1
USP38Q8NB14 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.31■■□□□ 1
USP38Q8NB14 AC006538.3-201ENST00000612495 578 ntBASIC21.31■■□□□ 1
USP38Q8NB14 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
USP38Q8NB14 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
USP38Q8NB14 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
USP38Q8NB14 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.31■■□□□ 1
USP38Q8NB14 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
USP38Q8NB14 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.3■■□□□ 1
USP38Q8NB14 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms