Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC23.83■■□□□ 1.41
SYNE4Q8N205 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
SYNE4Q8N205 ILF2-202ENST00000368681 726 ntTSL 2 BASIC23.83■■□□□ 1.41
SYNE4Q8N205 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SYNE4Q8N205 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SYNE4Q8N205 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC23.83■■□□□ 1.41
SYNE4Q8N205 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC23.83■■□□□ 1.41
SYNE4Q8N205 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC23.83■■□□□ 1.41
SYNE4Q8N205 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC23.83■■□□□ 1.41
SYNE4Q8N205 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC23.83■■□□□ 1.41
SYNE4Q8N205 AC069148.1-201ENST00000608741 768 ntBASIC23.83■■□□□ 1.41
SYNE4Q8N205 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SYNE4Q8N205 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.83■■□□□ 1.4
SYNE4Q8N205 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.4
SYNE4Q8N205 GPAT2P1-201ENST00000444924 1672 ntBASIC23.83■■□□□ 1.4
SYNE4Q8N205 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SYNE4Q8N205 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 FXN-203ENST00000396366 922 ntTSL 2 BASIC23.82■■□□□ 1.4
SYNE4Q8N205 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC23.82■■□□□ 1.4
SYNE4Q8N205 SPDYE13P-201ENST00000445314 798 ntBASIC23.82■■□□□ 1.4
SYNE4Q8N205 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC23.82■■□□□ 1.4
SYNE4Q8N205 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC23.82■■□□□ 1.4
SYNE4Q8N205 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE4Q8N205 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 AL136038.3-201ENST00000561909 1096 ntBASIC23.81■■□□□ 1.4
SYNE4Q8N205 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC23.81■■□□□ 1.4
SYNE4Q8N205 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE4Q8N205 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE4Q8N205 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.8■■□□□ 1.4
SYNE4Q8N205 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC23.8■■□□□ 1.4
SYNE4Q8N205 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE4Q8N205 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC23.8■■□□□ 1.4
SYNE4Q8N205 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE4Q8N205 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE4Q8N205 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE4Q8N205 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC23.8■■□□□ 1.4
SYNE4Q8N205 VENTXP5-201ENST00000523979 775 ntBASIC23.8■■□□□ 1.4
SYNE4Q8N205 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC23.8■■□□□ 1.4
SYNE4Q8N205 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE4Q8N205 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE4Q8N205 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE4Q8N205 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE4Q8N205 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE4Q8N205 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SYNE4Q8N205 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.79■■□□□ 1.4
SYNE4Q8N205 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC23.79■■□□□ 1.4
SYNE4Q8N205 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE4Q8N205 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE4Q8N205 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC23.79■■□□□ 1.4
SYNE4Q8N205 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE4Q8N205 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE4Q8N205 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC23.79■■□□□ 1.4
SYNE4Q8N205 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC23.79■■□□□ 1.4
SYNE4Q8N205 AP000523.1-201ENST00000398242 1049 ntBASIC23.79■■□□□ 1.4
SYNE4Q8N205 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC23.79■■□□□ 1.4
SYNE4Q8N205 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE4Q8N205 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE4Q8N205 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE4Q8N205 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.79■■□□□ 1.4
SYNE4Q8N205 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE4Q8N205 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC23.79■■□□□ 1.4
SYNE4Q8N205 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
SYNE4Q8N205 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.79■■□□□ 1.4
SYNE4Q8N205 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE4Q8N205 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC23.78■■□□□ 1.4
SYNE4Q8N205 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
SYNE4Q8N205 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE4Q8N205 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE4Q8N205 NEK4P2-201ENST00000580004 1012 ntBASIC23.78■■□□□ 1.4
SYNE4Q8N205 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms